CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCGI (Riboflavin biosynthesis protein ribBA OS=Mycobacterium gilvum (strain PYR-GCK) GN=ribBA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.396e-76
Identity = 143/237 (60.34%), Postives = 179/237 (75.53%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDI----GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG   A  +CE+V   D+G+MA+  +LR FA   +L +ISIADLI +RRK +K + R + ARIPT  G F A  Y SI + +EH+A+VKGDI    GDG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARLAGLQAAGTICEIVSQKDEGAMAQTDELRIFADEHDLALISIADLIEWRRKHEKHIARVAEARIPTRHGEFRAVGYTSIYEDVEHVALVKGDIAGPHGDGHDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGDDTVDANLKLGLPADARDYGTGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCVP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.742e-76
Identity = 143/237 (60.34%), Postives = 179/237 (75.53%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  PA  +CE+V   D+G+MA+  +LR FA   +L +ISIADLI +RRK +K + R + ARIPT  G F A  Y SI + +EH+A+VKG+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARLAGLQPAGAICEIVSQKDEGAMAQTDELRIFADEHDLALISIADLIEWRRKHEKHIARVAEARIPTRHGEFRAVGYTSIYEDVEHVALVKGEISGPHSDGHDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGDDTVDANLKLGLPADARDYGTGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLPN (Riboflavin biosynthesis protein ribBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.794e-76
Identity = 133/231 (57.58%), Postives = 180/231 (77.92%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            E++VDL  LAG  P  VL E+V++D SM RLP++ EFA++ N+ +I +  +I +R   D+LV + S+AR+PT++G FT + Y S+L+G++H+A+VKG++    ++LVRVHSEC+TGDI GS RCDCG+QL+ AM  I   G GVLVYLRG EGRGIGLGHK+RAY LQD+G DTV+AN  +G PVDSREYGIGAQ+L DL + T+KL+T+NP KY GL+G+GL++  RVPL
Sbjct:  155 ESTVDLMELAGLQPCGVLAELVNEDYSMMRLPQILEFARKHNIAVIPVTSIIAHRMLSDRLVSKISSARLPTIYGDFTIHVYESLLEGMQHLALVKGNVAGKSNVLVRVHSECVTGDILGSKRCDCGEQLSSAMSYIAEKGTGVLVYLRGQEGRGIGLGHKVRAYALQDNGYDTVDANLAMGFPVDSREYGIGAQILVDLKLTTIKLITHNPQKYFGLQGFGLSITERVPL 385          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_PELLD (Riboflavin biosynthesis protein ribBA OS=Pelodictyon luteolum (strain DSM 273) GN=ribBA PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.279e-75
Identity = 137/231 (59.31%), Postives = 178/231 (77.06%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  P  +LCE++ DDGSMARLP+L +F ++  LK+I+I DL+ YR +R+KLV+R+  +++PT +G F    Y S +D   H+A VKGD+  G+ +LVRVHS+C TGD F S RCDCG+QLA A++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQD+G DTVEANE+LG   D R+YGIGAQ+L+DLGVR M+L+TNNP K +GL+GYGL +  R+PL
Sbjct:  149 EAAVDLARLAGCSPVGLLCEILHDDGSMARLPELLKFKEKFGLKLITIKDLVAYRMQRNKLVERAVESKLPTAYGEFGLIAYESFIDHHNHMAFVKGDVSSGEPVLVRVHSQCATGDTFASLRCDCGNQLASALRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDEGFDTVEANEQLGFKADLRDYGIGAQILQDLGVRKMRLLTNNPKKVIGLEGYGLEIVERLPL 378          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CLONN (Riboflavin biosynthesis protein ribBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.861e-75
Identity = 132/231 (57.14%), Postives = 175/231 (75.76%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  PA  +CE++++DG+MAR+P L ++ K  NLKI++IADLI YRRK +  ++R  +A +PT +G F    Y   L G EH+A+VKGDI +G+ +L+RVHSECLTGD+ GS RCDCGDQLA A++QI   GRG L+Y+R  EGRGIGL +K++AY LQD+G DTV+AN  LG P D R+YGIGAQ+L+DLGV  ++LMTNNP K  G+ GYG+ +  RVP+
Sbjct:  147 EAAVDLATLAGLTPAGTICEIMNEDGTMARVPDLMKYVKVHNLKIVTIADLIEYRRKTESFIERQGSASLPTKYGEFEIIGYEDKLTGKEHVALVKGDIKNGEPVLIRVHSECLTGDVLGSLRCDCGDQLAQALRQINKEGRGALLYMR-QEGRGIGLINKIKAYKLQDNGMDTVDANLALGFPEDLRDYGIGAQILKDLGVEKVRLMTNNPKKVSGISGYGIEIVERVPI 376          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_GEOSW (Riboflavin biosynthesis protein ribBA OS=Geobacillus sp. (strain WCH70) GN=ribBA PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.414e-74
Identity = 140/231 (60.61%), Postives = 175/231 (75.76%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G  PA V+CE++ +DG+MAR+  LR+ A   +LK+I+I DLI YRR+++KLV R     +PT +G F A  Y +I+DG EH+A+VKG+I   +  LVRVHSECLTGD+FGS RCDCG QL  A++QIE  GRGVL+Y+R  EGRGIGL +KLRAY LQ+ G DTVEANE LG P D R+YGIGAQ+L+DLGV  M+L+TNNP K  GLKG+GL V  RVPL
Sbjct:  143 EAAVDLARLCGAKPAGVICEIIKEDGTMARVSDLRKIADEFDLKMITIKDLIEYRRRKEKLVKREVEVMLPTEFGKFKAIGYTNIVDGKEHVALVKGEIIPDEPTLVRVHSECLTGDVFGSCRCDCGPQLHAALRQIEEEGRGVLLYMR-QEGRGIGLINKLRAYKLQEQGYDTVEANERLGFPADLRDYGIGAQILKDLGVTKMRLLTNNPRKITGLKGHGLEVVERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACWK (Riboflavin biosynthesis protein ribBA OS=Bacillus weihenstephanensis (strain KBAB4) GN=ribBA PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.151e-74
Identity = 138/231 (59.74%), Postives = 178/231 (77.06%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +PA V+CE++++DG+MAR+P L E AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL
Sbjct:  143 EAAVDLAKLCGAEPAGVICEIINEDGTMARVPDLLECAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDMKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGLDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVTERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCR (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ribBA PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.151e-74
Identity = 138/231 (59.74%), Postives = 179/231 (77.49%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +PA V+CE++++DG+MAR+P L E AK+ ++K+I+I DLI YRR  + LV R +   +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL
Sbjct:  143 EAAVDLAKLCGAEPAGVICEIINEDGTMARVPDLIECAKQFDIKMITIEDLIAYRRHHETLVTREAEITLPTDFGTFHAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVVERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACHK (Riboflavin biosynthesis protein ribBA OS=Bacillus thuringiensis subsp. konkukian GN=ribBA PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.167e-74
Identity = 137/231 (59.31%), Postives = 177/231 (76.62%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +PA V+CE++++DG+MAR+P L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL
Sbjct:  143 EAAVDLAQLCGAEPAGVICEIINEDGTMARVPDLLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFQAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLTVTERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCZ (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ZK / E33L) GN=ribBA PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.167e-74
Identity = 137/231 (59.31%), Postives = 177/231 (76.62%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +PA V+CE++++DG+MAR+P L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL
Sbjct:  143 EAAVDLAQLCGAEPAGVICEIINEDGAMARVPDLLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFQAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLTVTERVPL 372          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_MYCGI4.396e-7660.34Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCVP5.742e-7660.34Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_CHLPN9.794e-7657.58Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_PELLD1.279e-7559.31Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBBA_CLONN4.861e-7557.14Riboflavin biosynthesis protein ribBA OS=Clostridi... [more]
RIBBA_GEOSW1.414e-7460.61Riboflavin biosynthesis protein ribBA OS=Geobacill... [more]
RIBBA_BACWK3.151e-7459.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCR3.151e-7459.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACHK9.167e-7459.31Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCZ9.167e-7459.31Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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