CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC7 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain AH187) GN=ribBA PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.042e-73
Identity = 137/231 (59.31%), Postives = 176/231 (76.19%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +PA V+CE++++DG+MAR+P L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G  +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL
Sbjct:  143 EAAVDLAQLCGAEPAGVICEIINEDGTMARVPDLLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDSKEHIALVKGDISTGDPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC1 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ATCC 10987) GN=ribBA PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.042e-73
Identity = 137/231 (59.31%), Postives = 177/231 (76.62%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +PA V+CE++++DG+MAR+P L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL
Sbjct:  143 EAAVDLAQLCGAEPAGVICEIINEDGTMARVPDLLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.729e-72
Identity = 137/231 (59.31%), Postives = 169/231 (73.16%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  P  +LCE++ +DGSMARL  L    ++  LK+I+I DL+ ++ +R KLV R+  + IPT +G F    Y S  D   H+A VKGD+   + +LVRVHS+C TGD F S RCDCG+QLA A++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQDDG DTVEANEELG   D R+YGIGAQ+L+DLGVR M+LMTNNP K VGL+GYGL +  RVPL
Sbjct:  149 EAAVDLARLAGCSPVGLLCEILHEDGSMARLADLMTIKEKFGLKLITIKDLVAFQMRRSKLVQRAVESNIPTAYGEFRLMAYESFTDQQNHMAFVKGDVSTDEPVLVRVHSQCATGDTFASLRCDCGNQLASALRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDDGFDTVEANEELGFKADLRDYGIGAQILQDLGVRKMRLMTNNPKKVVGLEGYGLEIVERVPL 378          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_PROA2 (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.949e-72
Identity = 137/233 (58.80%), Postives = 173/233 (74.25%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIE--HIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  P  +LCE++ DDGSMARLP+L +  ++ +LK+I+I DL+ Y+ KR KLV R+    +PT  G F    Y +  D  +  H+A VKGD    + +LVRVHS+C TGDIF S RCDCG+QLA AMQQIE AG+GVL+YL   EGRGIGL +KL+AYNLQD G DTVEANE+LG   D R+YGIGAQ+L+DLGV+ M+L+TNNP K VGL+GYGL +  RVP+
Sbjct:  149 EAAVDLAELAGSTPVGLLCEILHDDGSMARLPELLKIKEKFDLKLITIKDLVAYQMKRKKLVARAVETSLPTRHGDFRLIAYEACCDSQQQNHLAFVKGDFSTDEPVLVRVHSQCATGDIFASLRCDCGNQLASAMQQIEKAGKGVLIYLM-QEGRGIGLINKLKAYNLQDQGFDTVEANEQLGFKADLRDYGIGAQILQDLGVKKMRLLTNNPKKIVGLEGYGLEIVERVPI 380          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGL (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.851e-72
Identity = 136/235 (57.87%), Postives = 178/235 (75.74%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVV--DDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA  AG  PA V+CEVV  +D   MAR+P+LR F    +LK+ISI  LI +RRK + LV+R     +PT +G F A  YRSI+DG E +A+V GD+    G+++LVRVHSECLTGD+FGS RCDCG QL  +++ I+ AGRGV+VY+RGHEGRGIGL  KLRAY LQD+G DTV+AN  LGLP D+RE+G  AQ+L DLGVR++ L++NNP+K VGL+G+G+++A R P+
Sbjct:  152 EAAVDLARAAGLRPAGVICEVVSEEDPTGMARVPELRRFCDEHDLKLISIEQLIEWRRKNEILVERQVETVLPTDFGTFKAVGYRSIIDGTELVAIVAGDVASDGGENVLVRVHSECLTGDVFGSRRCDCGQQLHESLRLIQEAGRGVVVYMRGHEGRGIGLLAKLRAYQLQDEGADTVDANLALGLPADAREFGTSAQILYDLGVRSLNLISNNPAKKVGLEGHGISIASRTPI 386          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGB (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum (strain R) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.851e-72
Identity = 136/235 (57.87%), Postives = 178/235 (75.74%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVV--DDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA  AG  PA V+CEVV  +D   MAR+P+LR F    +LK+ISI  LI +RRK + LV+R     +PT +G F A  YRSI+DG E +A+V GD+    G+++LVRVHSECLTGD+FGS RCDCG QL  +++ I+ AGRGV+VY+RGHEGRGIGL  KLRAY LQD+G DTV+AN  LGLP D+RE+G  AQ+L DLGVR++ L++NNP+K VGL+G+G+++A R P+
Sbjct:  152 EAAVDLARAAGLRPAGVICEVVSEEDPTGMARVPELRRFCDEHDLKLISIEQLIEWRRKNEILVERQVETVLPTDFGTFKAVGYRSIIDGTELVAIVAGDVASDGGENVLVRVHSECLTGDVFGSRRCDCGQQLHESLRLIQEAGRGVVVYMRGHEGRGIGLLAKLRAYQLQDEGADTVDANLALGLPADAREFGTSAQILYDLGVRSLNLISNNPAKKVGLEGHGISIASRTPI 386          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNY3 (Riboflavin biosynthesis protein ribBA OS=Synechocystis sp. (strain PCC 6803) GN=ribBA PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.580e-72
Identity = 137/233 (58.80%), Postives = 174/233 (74.68%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDL+ LAG  PA V+CE+ + DGSMARLP+L E+A++ +LK+ISIADLI YR + D+ V R +    P+ +G F  Y YR++LD  EHIA+VKGD  +   Q ++VR+HSECLTGD  GS RCDC  QL  A++ +E  G GV+VYLR  EGRGIGL +KL+AY+LQD G DTVEANE LG P D R+YG+GAQML DLGV+ ++L+TNNP K  GLKGYGL +  RVPL
Sbjct:  146 EAAVDLSRLAGLYPAGVICEIQNADGSMARLPELVEYARKYDLKLISIADLISYRLQHDRFVQRETICEFPSQFGEFKLYAYRNLLDQTEHIAIVKGDPSEFGQQPVMVRMHSECLTGDALGSLRCDCRMQLQAALKMLENHGLGVVVYLR-QEGRGIGLVNKLKAYSLQDLGYDTVEANERLGFPADLRDYGMGAQMLNDLGVKQIRLITNNPRKIAGLKGYGLEIVERVPL 377          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCN (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ribBA PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.911e-71
Identity = 131/231 (56.71%), Postives = 173/231 (74.89%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G +P  V+CE++ +DG+MAR+P L + AK+ ++K+I+I DLI YRR  +  V +     +PT +G F A  Y + LD  EHIA++KGD+   + +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  GRGVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L +  RVPL
Sbjct:  143 EAAVDLAKLCGTEPVGVICEIIKEDGTMARVPDLIQVAKQFDIKMITIEDLIAYRRHHETFVTKEVEITLPTEFGTFHAIGYTNSLDQKEHIALIKGDVSTDEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALTQIEREGRGVLLYMR-QEGRGIGLLNKLRAYKLQEEGLDTVEANEKLGFPADLRDYGIGAQILKDLGLQKLRLLTNNPRKIAGLQGYELEIVERVPL 372          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACSU (Riboflavin biosynthesis protein ribBA OS=Bacillus subtilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.496e-71
Identity = 138/232 (59.48%), Postives = 173/232 (74.57%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQD-ILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA   G   A V+CE++++DG+MAR+P+L E AK+  LK+I+I DLI+YR     LV+R     +PT +G F  Y Y + +DG EH+A V GD+  G++ +LVRVHSECLTGD+FGS RCDCG QL  A+ QI A GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGVR MKL+TNNP K  GL+GYGL+++ RVPL
Sbjct:  143 EAAVDLAEACGSPGAGVICEIMNEDGTMARVPELIEIAKKHQLKMITIKDLIQYRYNLTTLVEREVDITLPTDFGTFKVYGYTNEVDGKEHVAFVMGDVPFGEEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALNQIAAEGRGVLLYLR-QEGRGIGLINKLKAYKLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVRNMKLLTNNPRKIAGLEGYGLSISERVPL 373          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_THEPX (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter sp. (strain X514) GN=ribBA PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.149e-70
Identity = 135/231 (58.44%), Postives = 173/231 (74.89%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLAVLAG  PA V+CE++ DDG+MARLP L EFAK+  L+IISI DLI+YR K + LV R + A++PT +G F    Y  IL G +H+A++KGD+ + + +LVR+HSECLTGDI GS RCDCGDQL  AM++I   G G+LVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K   L  YGL V  RV +
Sbjct:  143 EAAVDLAVLAGLKPAGVICEIIKDDGNMARLPDLLEFAKKFGLRIISIEDLIKYRMKNEILVRRVAQAKLPTKYGNFEIVGYEEILTGKQHVALIKGDV-NKEPVLVRIHSECLTGDILGSLRCDCGDQLHAAMERIGQEG-GILVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYNIAAQILKDIGVKKIRIMTNNPQKITELSDYGLDVVERVSI 370          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_BACC72.042e-7359.31Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC12.042e-7359.31Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_PROVI1.729e-7259.31Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_PROA22.949e-7258.80Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_CORGL3.851e-7257.87Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_CORGB3.851e-7257.87Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_SYNY38.580e-7258.80Riboflavin biosynthesis protein ribBA OS=Synechocy... [more]
RIBBA_BACCN1.911e-7156.71Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACSU2.496e-7159.48Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_THEPX6.149e-7058.44Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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