CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_THEP3 (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ribBA PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.337e-69
Identity = 136/231 (58.87%), Postives = 173/231 (74.89%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLAVLAG  PA V+CE++ DDG+MARLP L EFAK+  L+IISI DLI+YR K + LV R + A++PT +G F    Y  IL   +H+A++KGDI + + +LVR+HSECLTGDI GS RCDCGDQL  AM++I   G GVLVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K + L  YGL V  RV +
Sbjct:  143 EAAVDLAVLAGLKPAGVICEIIKDDGNMARLPDLLEFAKKFGLRIISIEDLIKYRMKNEILVRRVAQAKLPTKYGNFEIVGYEEILTRKQHVALIKGDI-NKEPVLVRIHSECLTGDILGSLRCDCGDQLHAAMERIGQEG-GVLVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYSIAAQILKDIGVKKIRIMTNNPQKIMELSDYGLDVVERVSI 370          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFR (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.160e-68
Identity = 130/229 (56.77%), Postives = 169/229 (73.80%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EASVDLA LAG  PAA L E++++DG+MARLP+L E A+R  LKIISI DLI YR + + +VDR     +PT +G F    +R   +G+EHIA++KG     + ILVRVHS C+TGDIFGS RC+CG+QL  AM+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V
Sbjct:  148 EASVDLAKLAGLYPAAALIEIINEDGTMARLPQLVEVARRFGLKIISIKDLIAYRLQMESIVDRGVEVDMPTQFGHFRLIPFRQKSNGMEHIALIKGTWDTDEPILVRVHSSCMTGDIFGSCRCECGEQLHKAMEMIEAAGKGVIVYM-NQEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENV 375          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFN (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.160e-68
Identity = 130/229 (56.77%), Postives = 169/229 (73.80%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EASVDLA LAG  PAA L E++++DG+MARLP+L E A+R  LKIISI DLI YR + + +VDR     +PT +G F    +R   +G+EHIA++KG     + ILVRVHS C+TGDIFGS RC+CG+QL  AM+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V
Sbjct:  148 EASVDLAKLAGLYPAAALIEIINEDGTMARLPQLVEVARRFGLKIISIKDLIAYRLQMESIVDRGVEVDMPTQFGHFRLIPFRQKSNGMEHIALIKGTWDTDEPILVRVHSSCMTGDIFGSCRCECGEQLHKAMEMIEAAGKGVIVYM-NQEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENV 375          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPL (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.515e-68
Identity = 128/231 (55.41%), Postives = 164/231 (71.00%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG   A + CE++ DDG+M  +P L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+
Sbjct:  147 EATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPI 376          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPJ (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.515e-68
Identity = 128/231 (55.41%), Postives = 164/231 (71.00%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG   A + CE++ DDG+M  +P L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+
Sbjct:  147 EATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPI 376          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTP7 (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.515e-68
Identity = 128/231 (55.41%), Postives = 164/231 (71.00%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG   A + CE++ DDG+M  +P L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+
Sbjct:  147 EATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPI 376          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTP2 (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.515e-68
Identity = 128/231 (55.41%), Postives = 164/231 (71.00%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG   A + CE++ DDG+M  +P L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+
Sbjct:  147 EATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPI 376          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACA2 (Riboflavin biosynthesis protein ribBA OS=Bacillus amyloliquefaciens (strain FZB42) GN=ribBA PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.978e-68
Identity = 134/232 (57.76%), Postives = 169/232 (72.84%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG-DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA   G   A V+CE++++DG+MAR+P+L E A+R  LK+I+I DLI YR     LV+R     +PT +G F  Y Y + +DG EH+A V GD+  + + +LVRVHSECLTGD+F S RCDCG QL  A+ QI   GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGV+ MKL+TNNP K  GL+GYGL+++ RVPL
Sbjct:  143 EAAVDLAKACGSQGAGVICEIMNEDGTMARVPELAEIAERHQLKMITIKDLIEYRYNITTLVNREVDITLPTDFGTFRVYGYTNEVDGKEHLAFVMGDVPFNSEPVLVRVHSECLTGDVFASHRCDCGPQLHAALAQIAEEGRGVLLYLR-QEGRGIGLINKLKAYRLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVQHMKLLTNNPRKIAGLEGYGLSISERVPL 373          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACAM (Riboflavin biosynthesis protein ribBA OS=Bacillus amyloliquefaciens GN=ribBA PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.282e-67
Identity = 133/232 (57.33%), Postives = 168/232 (72.41%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG-DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA   G   A V+CE++++DG+MAR+P++ E AK   LK+I+I DLI YR     LV+R     +PT +G F  Y Y + +DG EH+A V GD+  +   +LVRVHSECLTGD+F S RCDCG QL  A++QI   GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGV+ MKL+TNNP K  GL+GYGL+++ RVPL
Sbjct:  143 EAAVDLAKACGSQGADVICEIMNEDGTMARVPEISEIAKSHQLKMITIKDLIEYRYNITTLVNREVDITLPTDFGTFRVYGYTNEVDGKEHLAFVMGDVPFNSGPVLVRVHSECLTGDVFASHRCDCGPQLHAALRQIAEEGRGVLLYLR-QEGRGIGLINKLKAYRLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVQHMKLLTNNPRKIAGLEGYGLSISDRVPL 373          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACV8 (Riboflavin biosynthesis protein ribBA OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ribBA PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.674e-67
Identity = 127/231 (54.98%), Postives = 168/231 (72.73%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA +D+A LAG  PAA L E++ +DG+MARLP+LR+ A    LK+ISI DLI YR K++ LV++     +PT +G F    +R   +G+EHIA++KGDI +G+ +LVRVHS C TGDIFGS RCDCG+QL  A+Q IE  G+G +VYL   EGRGIGL  K++AY LQ++G DTVEAN  LG   D R+YG+GAQ+LR +GV  M+L+TNNP K VGL+ YGL++   VP+
Sbjct:  148 EACIDMARLAGLYPAAALMEIMSEDGTMARLPELRKMADEWGLKLISIRDLIAYRLKQESLVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIAIIKGDIKEGEPVLVRVHSSCATGDIFGSMRCDCGEQLHKALQMIEKEGKGAVVYL-NQEGRGIGLMEKMKAYKLQENGVDTVEANILLGHQADERDYGVGAQILRSIGVTQMRLLTNNPVKRVGLESYGLSIVENVPI 377          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_THEP32.337e-6958.87Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_BACFR1.160e-6856.77Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_BACFN1.160e-6856.77Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_ACTPL1.515e-6855.41Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTPJ1.515e-6855.41Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTP71.515e-6855.41Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTP21.515e-6855.41Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_BACA21.978e-6857.76Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACAM1.282e-6757.33Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACV81.674e-6754.98Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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