CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CYTH3 (Riboflavin biosynthesis protein ribBA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ribBA PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.188e-66
Identity = 125/231 (54.11%), Postives = 162/231 (70.13%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAGF PA VL E++ +DGSMARLP+L++ A + NLK+ISI DLI YR   + LV R     +PT  G F    +R I  G  H+A++KG     + ++VRVHS C+TGDIFGS RCDCG QL  AM+ I+  G+GV++Y+   EGRGIGL +KL+AY LQ+ GRDTVEAN ELG  +D R+YG GAQ+LRDL +  ++L+TNNP K   L GYGL +   VP+
Sbjct:  149 EAAVDLARLAGFKPAGVLIEIMSEDGSMARLPELKQIATKFNLKLISIKDLIEYRLTHESLVKREIGVDMPTNLGDFDLIAFRQISTGEVHLALIKGTWEKDEPVMVRVHSSCVTGDIFGSCRCDCGPQLHKAMEMIQQEGKGVILYM-NQEGRGIGLLNKLKAYKLQEQGRDTVEANLELGFKMDQRDYGTGAQILRDLNISKLRLITNNPVKRAALAGYGLEITEAVPI 378          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CORAM (Riboflavin biosynthesis protein ribBA OS=Corynebacterium ammoniagenes GN=ribBA PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.673e-65
Identity = 122/236 (51.69%), Postives = 169/236 (71.61%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVV--DDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKG---DIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA++DLA LAG  PA VLCE+V  +D  +MAR  +LR F+   +LK+ISI  LI +RR  +  V R+   ++PT +G FTA  Y+  +DG EH+A++ G   ++   +D+ VRVHSECLTGD+F S RCDCG QL  +M+ I+ AG+G+++YLRGHEGRGIGL  KL+AY+LQD G DTV+AN E GLP D+REY +  Q+LRDLG+++  L+TNNP K  GL+G+G+  +   P+
Sbjct:  152 EAAIDLARLAGLRPAGVLCEIVSEEDPTTMARSEELRRFSDEHDLKMISIEQLIEWRRHNETQVRRTVETQLPTDFGSFTALGYKHEIDGQEHVALIAGGVEELNGAEDVFVRVHSECLTGDVFHSRRCDCGQQLHQSMEIIQEAGQGIIIYLRGHEGRGIGLLAKLKAYSLQDSGLDTVDANLEQGLPEDAREYSVAGQILRDLGIKSANLLTNNPHKGEGLRGFGVEASAHTPV 387          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLTR (Riboflavin biosynthesis protein ribBA OS=Chlamydia trachomatis GN=ribBA PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.492e-65
Identity = 121/231 (52.38%), Postives = 167/231 (72.29%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA++DL  LAG  P  +  E+V+ D SM R  ++  FA++ +L +I++ DLI YR   D LV + S+AR+PT +G F+ + Y SI+DG +H A+VKGDI + + + VRVHSECLTGDI GS RCDCG QL +AM+ I   G GV+VYLRG EGRGIG GHK+RAY LQD G DTV+AN +LG P+D+REYG+ AQ+L+DL + +++L+T+NP K+  L+  G+ V  R+ L
Sbjct:  150 EAAMDLMRLAGMQPCGIFAELVNPDHSMMRQQQVLAFAEQHDLTVITVDDLITYRYTYDSLVTKISSARLPTKYGDFSIHVYESIIDGTQHFALVKGDIHEQEAVPVRVHSECLTGDILGSCRCDCGAQLDMAMRYIAEEGLGVIVYLRGQEGRGIGFGHKIRAYALQDLGYDTVDANLQLGFPIDAREYGMAAQVLKDLQLTSVRLITHNPRKFFELQRLGIHVLDRIIL 380          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLMU (Riboflavin biosynthesis protein ribBA OS=Chlamydia muridarum GN=ribBA PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.956e-65
Identity = 120/231 (51.95%), Postives = 165/231 (71.43%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EAS+DL  LAG  P  +  E+V+ D SM R  ++ +FA++    +I++ DLI YR   D LV+  S+ARIPT +G F  + Y+SI+DG EH A+VKGDI + + + VRVHSECLTGD+ GS RCDCG QL +AM+ I   G GV+VYLRG EGRGIG GHK++AY LQD G DTVEAN +L  P+D+REYG+ AQ+L+DL + +++L+T+NP K+  L+  G+ +  R+ L
Sbjct:  150 EASMDLMRLAGMYPCGIFAELVNADHSMMRQQQILDFAEQHGFTVITVDDLITYRWTFDSLVEHVSSARIPTKYGEFFIHVYKSIIDGTEHFALVKGDIREQESVPVRVHSECLTGDVLGSCRCDCGAQLDMAMRYIAEQGLGVIVYLRGQEGRGIGFGHKIQAYALQDLGYDTVEANLQLSFPIDAREYGVAAQILKDLRLTSVRLITHNPKKFFELQRLGIHILDRIVL 380          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_PORGI (Riboflavin biosynthesis protein ribBA OS=Porphyromonas gingivalis GN=ribBA PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 122/231 (52.81%), Postives = 165/231 (71.43%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G  PAA L E++++DG+MARLP+L E +KR  LKII+I DLI YR K++ +V++     +PT +G F    +R   +G+EHIA+ KG   + + ILVR+HS C TGDIFGS RCDCG QL  AM++IE  G+G ++YL   EGRGIGL  K++AY LQ+ G DT++AN  LG   D R+YGIGAQ+LR LG++ M+LMTNNP K +GL+ +GL +   +PL
Sbjct:  149 EAAVDLARLCGMQPAAALIEIINEDGTMARLPQLWEVSKRFGLKIIAIKDLIAYRLKQESIVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIALFKGTWDENEPILVRMHSSCATGDIFGSMRCDCGGQLLQAMEKIEKEGKGAIIYL-NQEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPL 378          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_PORG3 (Riboflavin biosynthesis protein ribBA OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ribBA PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 122/231 (52.81%), Postives = 165/231 (71.43%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G  PAA L E++++DG+MARLP+L E +KR  LKII+I DLI YR K++ +V++     +PT +G F    +R   +G+EHIA+ KG   + + ILVR+HS C TGDIFGS RCDCG QL  AM++IE  G+G ++YL   EGRGIGL  K++AY LQ+ G DT++AN  LG   D R+YGIGAQ+LR LG++ M+LMTNNP K +GL+ +GL +   +PL
Sbjct:  149 EAAVDLARLCGMQPAAALIEIINEDGTMARLPQLWEVSKRFGLKIIAIKDLIAYRLKQESIVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIALFKGTWDENEPILVRMHSSCATGDIFGSMRCDCGGQLLQAMEKIEKEGKGAIIYL-NQEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPL 378          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_PARD8 (Riboflavin biosynthesis protein ribBA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ribBA PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 124/231 (53.68%), Postives = 165/231 (71.43%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  PA  L E++++DG+MARLP+L E AK+ ++KII I DLI YR + + +V+      +PT +G F    +R   +G+EHIA++KG     + ILVRVHS C TGDIFGS RC+CG+QL  AM++I+  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR +GV  M+LM+NNP K VGL+ YGL V   VP+
Sbjct:  149 EAAVDLARLAGLYPAGALIEIINEDGTMARLPQLIEVAKKFDIKIICIKDLIAYRLRTESIVENGVEVDLPTEYGHFRLIPFRQKSNGLEHIALIKGKFEKDEPILVRVHSSCATGDIFGSMRCECGEQLHEAMRRIDQEGKGVIVYL-NQEGRGIGLMEKMKAYKLQEDGLDTVDANLHLGHQADERDYGVGAQILRHIGVTKMRLMSNNPVKRVGLEAYGLEVVENVPI 378          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BACTN (Riboflavin biosynthesis protein ribBA OS=Bacteroides thetaiotaomicron GN=ribBA PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 125/231 (54.11%), Postives = 162/231 (70.13%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA++D+A LAG  PA  L E++ DDG+MARLP+LR  A    LK+ISI DLI YR K++ +V++     +PT  G F    +R   +G+EH+A+ KG   + + ILVRVHS C TGDI GS RCDCG+QL  AM+ IE  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR+LGV  MKL+TNNP K VGL+ YGL +   VP+
Sbjct:  148 EATIDMARLAGLYPAGALMEIMSDDGTMARLPELRAMADEHGLKLISIHDLIAYRLKQESIVEKGVEVNMPTEHGMFRLIPFRQKSNGLEHMAIFKGTWNEDEPILVRVHSSCATGDILGSHRCDCGEQLHKAMEMIEKEGKGVVVYL-NQEGRGIGLMEKMKAYKLQEDGMDTVDANLCLGHLADERDYGVGAQILRELGVHKMKLLTNNPVKRVGLEAYGLEIVENVPV 377          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_UNCTG (Riboflavin biosynthesis protein ribBA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.123e-63
Identity = 118/231 (51.08%), Postives = 165/231 (71.43%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDL  LAGF PA ++CE++++DG+MAR+  L +FAK+ +L II+I +L+ YRR+ +K +       +PT +G F    +  ++    HIA+VKG + + Q++LVRVHS C TGDIF S RCDCGDQL  A++ +  A +GV++Y+   EGRGIGL +KL+AY LQ+ G DTVEAN+ LG   D R+YGIGAQML +LG++++ LMTNNP K  GL+ YGL +  RVPL
Sbjct:  148 EAAVDLVRLAGFYPAGIICEIMNNDGTMARMSDLIKFAKKHDLHIITIGELVNYRRRTEKFISEIVNVDLPTRYGDFKLVLFEDLITKDSHIAVVKGVVKNRQNVLVRVHSSCETGDIFHSLRCDCGDQLETALKAVGEAEQGVVLYIH-QEGRGIGLANKLKAYRLQEKGMDTVEANKALGFDPDLRDYGIGAQMLSELGIKSINLMTNNPGKINGLESYGLKITKRVPL 377          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_ARCFU (GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=ribA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.969e-57
Identity = 114/226 (50.44%), Postives = 158/226 (69.91%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPT-MWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAV 676
            EA VDLA +AGF P+AV   ++  +G +A      +FAK  ++ +  I D+I +R K +K+V+R   A +PT  +G F A  Y++ L  I  +A+VKG + +G D+LVR+HSECLTGD+F S RCDCGDQL  A++ I+  G+GV +Y+RGHEGRGIGL +KL AY LQ++G+DTV+AN ELG P D R YGI AQ+L DL V++++L+TNNP K   LK YG  +
Sbjct:  124 EACVDLARMAGFAPSAVYAPLMTAEGGVAGEDYALKFAKEHSMPVFRIKDMIEFRIKSEKIVERVIEATLPTKFYGTFRAVGYKTPLGEI--VALVKGRVDEG-DVLVRIHSECLTGDVFHSLRCDCGDQLENALKMIDREGKGVAIYMRGHEGRGIGLINKLMAYKLQEEGKDTVDANIELGFPPDMRSYGIAAQILMDLKVKSIRLLTNNPLKIEELKKYGFKI 346          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_CYTH39.188e-6654.11Riboflavin biosynthesis protein ribBA OS=Cytophaga... [more]
RIBBA_CORAM2.673e-6551.69Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_CHLTR3.492e-6552.38Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_CHLMU5.956e-6551.95Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_PORGI1.016e-6452.81Riboflavin biosynthesis protein ribBA OS=Porphyrom... [more]
RIBBA_PORG31.016e-6452.81Riboflavin biosynthesis protein ribBA OS=Porphyrom... [more]
RIBBA_PARD81.016e-6453.68Riboflavin biosynthesis protein ribBA OS=Parabacte... [more]
RIBBA_BACTN1.016e-6454.11Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_UNCTG1.123e-6351.08Riboflavin biosynthesis protein ribBA OS=Unculture... [more]
RIBA_ARCFU5.969e-5750.44GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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