CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAW (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MW2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 105/229 (45.85%), Postives = 152/229 (66.38%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EA+VDLA L G  PA V+CE+++DDG+MA+   L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+
Sbjct:  144 EAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERI 368          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAS (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MSSA476) GN=ribBA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 105/229 (45.85%), Postives = 152/229 (66.38%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EA+VDLA L G  PA V+CE+++DDG+MA+   L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+
Sbjct:  144 EAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERI 368          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAR (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MRSA252) GN=ribBA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 105/229 (45.85%), Postives = 152/229 (66.38%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EA+VDLA L G  PA V+CE+++DDG+MA+   L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+
Sbjct:  144 EAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKFKEKHKLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERI 368          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAC (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain COL) GN=ribBA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 105/229 (45.85%), Postives = 152/229 (66.38%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EA+VDLA L G  PA V+CE+++DDG+MA+   L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+
Sbjct:  144 EAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERI 368          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAN (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain N315) GN=ribBA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.206e-49
Identity = 105/229 (45.85%), Postives = 151/229 (65.94%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EA+VDLA L G  PA V+CE+++DDG+MA+   L+ F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+
Sbjct:  144 EAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQNFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERI 368          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAM (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ribBA PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.206e-49
Identity = 105/229 (45.85%), Postives = 151/229 (65.94%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRV 688
            EA+VDLA L G  PA V+CE+++DDG+MA+   L+ F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+
Sbjct:  144 EAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQNFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERI 368          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_BURMA (GTP cyclohydrolase-2 OS=Burkholderia mallei GN=ribA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.983e-49
Identity = 93/166 (56.02%), Postives = 123/166 (74.10%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            + A +PT +G FT+Y +R      EH+A+V GD+ +   +L R+HSECLTGD+FGS RCDCG+QL L+++ I A GRGVL+YLRGHEGRGIGL +K+RAY LQ+ GRDTVEAN +LGLP D+REY   A +LR L V +++LM+NNP K+  L  +G+ V  RV L
Sbjct:    5 ATATLPTRYGTFTSYAFRVAGGDAEHLALVMGDVAEQPSVLTRLHSECLTGDVFGSYRCDCGEQLDLSLRYIAAEGRGVLLYLRGHEGRGIGLSNKIRAYALQEQGRDTVEANLDLGLPDDAREYDSAAAILRILKVTSVRLMSNNPKKFDTLARHGIPVCERVAL 170          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAES (Riboflavin biosynthesis protein ribBA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ribBA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 101/231 (43.72%), Postives = 151/231 (65.37%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G  PA V+CE+++DDG+MA+   L+ F +R +LK+I+I  L+ +R+  +  V+  +  ++PT +G F  Y + +     E +A+VKGD+    +  VR+HS CLTGDIF S RCDCG QL  +M+ I+  G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y + A++L+   +  + L++NNP K+ GL+ YG+ +  R+ L
Sbjct:  144 EAAVDLARLTGAQPAGVICEIMNDDGTMAKGEDLQSFKERHHLKMITIKSLVAFRKAVELNVNLKAKVKMPTDFGHFDMYGFTTDYSDEEIVAIVKGDLKSNPN--VRMHSACLTGDIFHSQRCDCGAQLEASMKYIDEHG-GMIIYL-PQEGRGIGLINKLRAYELIEKGYDTVTANLALGFDEDLRDYHVAAEILKYFDISEINLLSNNPKKFEGLEDYGIEIVDRIEL 370          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAEQ (Riboflavin biosynthesis protein ribBA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ribBA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 101/231 (43.72%), Postives = 151/231 (65.37%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L G  PA V+CE+++DDG+MA+   L+ F +R +LK+I+I  L+ +R+  +  V+  +  ++PT +G F  Y + +     E +A+VKGD+    +  VR+HS CLTGDIF S RCDCG QL  +M+ I+  G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y + A++L+   +  + L++NNP K+ GL+ YG+ +  R+ L
Sbjct:  144 EAAVDLARLTGAQPAGVICEIMNDDGTMAKGEDLQSFKERHHLKMITIKSLVAFRKAVELNVNLKAKVKMPTDFGHFDMYGFTTNYSDEEIVAIVKGDLKSNPN--VRMHSACLTGDIFHSQRCDCGAQLEASMKYIDEHG-GMIIYL-PQEGRGIGLINKLRAYELIEKGYDTVTANLALGFDEDLRDYHVAAEILKYFDISEINLLSNNPKKFEGLEDYGIEIVDRIEL 370          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAS1 (Riboflavin biosynthesis protein ribBA OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ribBA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 103/231 (44.59%), Postives = 148/231 (64.07%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EASVDLA L G  PAA++CE++D+DG+MA+   L  F +   L +ISI DL +YR+     +D  +  ++PT +G F  Y + +     + + +  GDI   ++  VR+HS CLTGDIF S RCDCG+QLA +M+ I   G G+++YL   EGRGIGL +KL+AY L + G DTV AN  LG   D R+Y   AQ+L+  GV ++ L++NNP K+  L+ YG+ +A R+ L
Sbjct:  144 EASVDLAKLTGAKPAALICEIMDEDGTMAKGASLEAFKETHGLVMISIEDLEKYRKSSISKLDAKAKVKMPTEYGNFDMYGFTTDNSEEDIVVIANGDINKTEN--VRIHSACLTGDIFHSQRCDCGEQLAASMKYIAEHG-GMILYLP-QEGRGIGLINKLKAYELIEQGYDTVSANIALGFEEDLRDYQNAAQILKYFGVDSVNLLSNNPKKFESLESYGIHIAKRIEL 370          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_STAAW9.231e-5045.85Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAS9.231e-5045.85Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAR9.231e-5045.85Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAC9.231e-5045.85Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAN1.206e-4945.85Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAM1.206e-4945.85Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBA_BURMA5.983e-4956.02GTP cyclohydrolase-2 OS=Burkholderia mallei GN=rib... [more]
RIBBA_STAES8.640e-4843.72Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAEQ8.640e-4843.72Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAS11.128e-4744.59Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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