CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_STAHJ (Riboflavin biosynthesis protein ribBA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ribBA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.514e-47
Identity = 104/231 (45.02%), Postives = 145/231 (62.77%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA L    PA V+CE++++DG+MA+  +L  F  +  LK+I+I  L+ Y++ +D  V+  +   +PT  G F  Y + S L   E + + KG+    ++  VR+HS CLTGDIF S RCDCG QL  AM+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L    V+ + L++NNP K+ GL  YG+ VA R P+
Sbjct:  144 EAAVDLAKLTKAAPAGVICEIMNEDGTMAKGEQLEAFKHQHGLKMITIESLVNYQKDKDTSVELKAKVNMPTDHGAFEMYGFESSLTKEEIVVLAKGEPRVTEN--VRIHSACLTGDIFHSQRCDCGAQLESAMKYINEHG-GMIIYLP-QEGRGIGLINKLRAYELIEQGHDTVTANLALGFDEDLRDYHIAAQILNYFNVQQVNLLSNNPKKFEGLSEYGIKVADRTPI 370          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_STRCO (GTP cyclohydrolase-2 OS=Streptomyces coelicolor GN=ribA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.514e-47
Identity = 95/170 (55.88%), Postives = 125/170 (73.53%), Query Frame = 2
Query:  185 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            V+R     +PT++G F A+ Y     G E +A+V GD+G  +D+L R+HSECLTGD FGS  C+CG QLA A++Q+  AG G++VYLRGHEGRGIGL  KLRA  LQ +G DTVEAN  LGLPVD+R+YG+ A++L DLGVR+++LM+NNP K   L  +G+ VA +VPL
Sbjct:   18 VERIVVTPLPTVYGKFRAFGYFDHERGDEQVALVHGDLG-AEDVLTRLHSECLTGDAFGSQHCECGAQLASALRQVADAGSGIVVYLRGHEGRGIGLLAKLRAMALQAEGLDTVEANLALGLPVDARDYGVAARILDDLGVRSVRLMSNNPRKREALVRHGIRVAEQVPL 186          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_THEMA (Riboflavin biosynthesis protein ribBA OS=Thermotoga maritima GN=ribBA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.741e-46
Identity = 99/225 (44.00%), Postives = 146/225 (64.89%), Query Frame = 2
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAV 676
            EAS++++ LAGF   AV+ E++D+ G+   L  + + +++ +L ++ + D+ R   KR  L+ + + A +PT +G F    + + LDG EH A+VK  + D   + VR+HSEC+TGD+  S RCDCG QLA  ++ + A G G+L+YLR  EGRGIGL +K+ AY+LQD G DTVEAN  LG   D R+Y   AQ+L+ LG+  + L TNN  K VGL+ YG+ V
Sbjct:  130 EASLEISELAGFSRHAVIVEILDEKGNSHNLDYVLKLSEKFSLPVLEMDDVWREFVKRKLLMKKKAEATLPTDFGVFKVVSFENHLDGKEHFAIVKEPLED--PVAVRIHSECVTGDVLSSLRCDCGSQLANFLRYMSAHG-GILIYLR-QEGRGIGLSNKIAAYSLQDKGLDTVEANRVLGFSEDERDYAPAAQILKALGIERVLLFTNNQRKTVGLEKYGIEV 350          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMA (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup A GN=ribA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.941e-45
Identity = 88/172 (51.16%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  179 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +L++  ++ R+PT WG FT + +     G EH+A+  GD  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++A GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL
Sbjct:    3 ELLNYVASCRLPTEWGVFTMHGFEEA-GGQEHVALTVGDCSDGNPVLTRIHSECLTGDALFSKKCDCGPQLEAAMKAVQAEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANVALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPL 172          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_NEIG1 (GTP cyclohydrolase-2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=ribA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.168e-44
Identity = 87/172 (50.58%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  179 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +L+D  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++A GRG++VYLR  EGRGIGL +K+RAY+LQ+ G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL
Sbjct:    3 ELLDHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNCSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQAEGRGIIVYLR-QEGRGIGLINKIRAYHLQEQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPL 172          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMF (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ribA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.795e-44
Identity = 85/172 (49.42%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  179 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            ++++  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL
Sbjct:    3 EMLNHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPL 172          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMB (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup B GN=ribA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.795e-44
Identity = 85/172 (49.42%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  179 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            ++++  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL
Sbjct:    3 EMLNHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPL 172          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_NEIM0 (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=ribA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.795e-44
Identity = 85/172 (49.42%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  179 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            ++++  ++ R+PT WG FT + +    +G EH+A+  G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL
Sbjct:    3 EMLNHVASCRLPTEWGVFTMHGFEEA-NGQEHVALTVGNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPL 172          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_AZOVD (GTP cyclohydrolase-2 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ribA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 91/166 (54.82%), Postives = 113/166 (68.07%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +G FT + +     G EH+A+  G + DG  +L R+HSECLTGD   S RCDCG QL  A++ I A GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+YGI   ML  LG+  +KLMTNNP K   L+G G+ V  RVPL
Sbjct:    7 AASKLPTPFGVFTMHGFLDEATGKEHVALTLGTVDDGAPVLGRLHSECLTGDALFSLRCDCGFQLEAALRAIAAEGRGVLLYLR-QEGRGIGLLNKIRAYKLQDAGADTVEANERLGFRADQRDYGICKPMLEHLGITAIKLMTNNPRKVKALEGAGIQVTERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPK (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain KT2440) GN=ribA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.876e-43
Identity = 90/166 (54.22%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  FT + +     G EH+ +  GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPL 171          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_STAHJ2.514e-4745.02Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBA_STRCO2.514e-4755.88GTP cyclohydrolase-2 OS=Streptomyces coelicolor GN... [more]
RIBBA_THEMA4.741e-4644.00Riboflavin biosynthesis protein ribBA OS=Thermotog... [more]
RIBA_NEIMA8.941e-4551.16GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_NEIG11.168e-4450.58GTP cyclohydrolase-2 OS=Neisseria gonorrhoeae (str... [more]
RIBA_NEIMF5.795e-4449.42GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_NEIMB5.795e-4449.42GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_NEIM05.795e-4449.42GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_AZOVD9.885e-4454.82GTP cyclohydrolase-2 OS=Azotobacter vinelandii (st... [more]
RIBA_PSEPK2.876e-4354.22GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
back to top