CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEP1 (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ribA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.876e-43
Identity = 90/166 (54.22%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  FT + +     G EH+ +  GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_AERHH (GTP cyclohydrolase-2 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=ribA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  203 ARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +++PT WG FT   ++    G +H A+V GDI   + +L R+HSECLTGD   S RCDCG QL  A++ I  AGRGVL+Y+R  EGRGIGL +K+RAY+LQD G DTVEAN  LG   D R+Y I A ML+ L V+++KLMTNNP K   ++ +G+ VA RVPL
Sbjct:   10 SKLPTPWGTFTLVGFQETGTGKDHAALVMGDITGDEPVLGRIHSECLTGDALFSLRCDCGFQLQAALENIAKAGRGVLLYVR-QEGRGIGLLNKIRAYHLQDQGADTVEANVALGFAADMRDYTICADMLKQLEVKSLKLMTNNPRKMKAMESFGIPVAERVPL 172          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPG (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain GB-1) GN=ribA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.407e-43
Identity = 89/166 (53.61%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  FT + +     G EH+ +  GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSESM (GTP cyclohydrolase-2 OS=Pseudomonas syringae pv. tomato GN=ribA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 89/166 (53.61%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  F  + +     G EH+ +  GD+ DG  +L RVHSECLTGD   S RCDCG QL  AM+ I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML+ LGV++++LMTNNP K   L   G+ VA RVPL
Sbjct:    7 AASKLPTPFAEFAMHGFIESATGREHVVLSLGDVADGAPVLGRVHSECLTGDALFSQRCDCGSQLEAAMRAIATEGRGVLLYLR-QEGRGIGLMNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLQHLGVQSLRLMTNNPRKVKALTDMGINVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPW (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain W619) GN=ribA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 89/166 (53.61%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  FT + +     G EH+ +  GDI DG+ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGEPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIKVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEFS (GTP cyclohydrolase-2 OS=Pseudomonas fluorescens (strain SBW25) GN=ribA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 91/166 (54.82%), Postives = 109/166 (65.66%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  FT   +     G EH+ +  GDI DG  +L RVHSECLTGD   S RCDCG QL  AM+ I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV +++LMTNNP K   L   G+ VA RVPL
Sbjct:    7 AASKLPTPFATFTMNGFLEEATGREHVVLSLGDIADGAPVLGRVHSECLTGDALFSQRCDCGSQLEAAMRAIAREGRGVLLYLR-QEGRGIGLMNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVSSLRLMTNNPRKVKALTEMGITVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_HAHCH (GTP cyclohydrolase-2 OS=Hahella chejuensis (strain KCTC 2396) GN=ribA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            ++ ++PT +G F  + ++ +    EHIA+  GDIGDG  +L R HSECLTGD   S RCDCG QL  A++ I A GRG+L+YLR  EGRGIGL +K+RAYNLQD G DTVEANE+LG   D R+Y +   ML  LG+  ++LMTNNP K   L   G+ V  RVPL
Sbjct:    7 ASCKLPTPFGVFDMHGFQEVGTQKEHIALTLGDIGDGASVLARTHSECLTGDALFSMRCDCGYQLDEALRSIAAEGRGILLYLR-QEGRGIGLLNKIRAYNLQDQGADTVEANEQLGFAADMRDYSMCKPMLYHLGISRIRLMTNNPRKVDSLTKLGIEVVERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEE4 (GTP cyclohydrolase-2 OS=Pseudomonas entomophila (strain L48) GN=ribA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.180e-42
Identity = 88/166 (53.01%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +  FT + +     G EH+ +  GDI DG+ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL
Sbjct:    7 AASKLPTPFAIFTMHGFLDEATGREHVVLSLGDIADGEPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMSIKVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEA7 (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (strain PA7) GN=ribA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.153e-42
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +G FT + +     G EH+A+  GDI DG  +L R+HSECLTGD   S RCDCG QL  A+  I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL
Sbjct:    7 AASKLPTPFGEFTMHGFLDEESGKEHVALTMGDIADGAPVLGRLHSECLTGDALFSLRCDCGFQLEGALAAIAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAVTVAERVPL 171          
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBA_PSEAE (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa GN=ribA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.424e-42
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  197 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            +A+++PT +G FT + +     G EH+A+  GDI DG  +L R+HSECLTGD   S RCDCG QL  A+  I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL
Sbjct:    7 AASKLPTPFGEFTMHGFLDEESGKEHVALSMGDIADGAPVLGRLHSECLTGDALFSLRCDCGFQLEGALAAIAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAITVAERVPL 171          
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBA_PSEP12.876e-4354.22GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_AERHH3.756e-4353.66GTP cyclohydrolase-2 OS=Aeromonas hydrophila subsp... [more]
RIBA_PSEPG6.407e-4353.61GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSESM8.368e-4353.61GTP cyclohydrolase-2 OS=Pseudomonas syringae pv. t... [more]
RIBA_PSEPW8.368e-4353.61GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEFS1.093e-4254.82GTP cyclohydrolase-2 OS=Pseudomonas fluorescens (s... [more]
RIBA_HAHCH1.864e-4253.01GTP cyclohydrolase-2 OS=Hahella chejuensis (strain... [more]
RIBA_PSEE43.180e-4253.01GTP cyclohydrolase-2 OS=Pseudomonas entomophila (s... [more]
RIBA_PSEA74.153e-4253.61GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (st... [more]
RIBA_PSEAE5.424e-4253.61GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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