CX292162

Overview
NameCX292162
Unique NameCX292162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_MYXXD (60 kDa chaperonin 1 OS=Myxococcus xanthus (strain DK 1622) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 124/245 (50.61%), Postives = 173/245 (70.61%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FGSP +  DGVT+A+ I+L +  EN GA +++EVASKT+D AGDGTTTA+VLAR I + GL  V +G +P+ LKRGIDK V  +V EL+  ++P   +  I  V TISA  D+ IG +IADA++KVG +GV+                GM+ DRGY+SP FVTN E++    E+  +L+++ K+S+++D+IPLLE+  +   PL+IIA D+ GEALATLVVNK+RG+LNV A+KAPGF
Sbjct:   37 NVVIEKSFGSPTITKDGVTVAKEIDLENKFENMGAQMVKEVASKTSDKAGDGTTTATVLARAIYEEGLKLVAAGHSPMDLKRGIDKAVEVVVGELKSLSKPTADKKAITQVGTISANGDETIGAIIADAMEKVGKEGVITVEEAKGLETTLDVVEGMQFDRGYVSPYFVTNRERMEAVLEDPYILISEKKVSSMQDMIPLLEQVARSGKPLIIIADDIEGEALATLVVNKIRGVLNVCAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 126/245 (51.43%), Postives = 169/245 (68.98%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV++  FG+P V  DGV++A+ IEL D ++N GA L++EVASKT+D+AGDGTTTA+VLA+ I++ G   V +G NP+ LKRGIDK V  LV EL+K ++P     +I  V +ISA  D+ IG +IADA+DKVG +GV+                GM+ DRGY+SP F+ NP+K     +N  VL+ D KIS I+D++P LE+  +   PLL+IA +V GEALATLVVN +RGIL V A+KAPGF
Sbjct:   37 NVVIERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGINPMDLKRGIDKAVTALVAELKKASKPTTTSKEIAQVGSISANADETIGKLIADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPDKQAALLDNPFVLLFDKKISNIRDLLPTLEQVAKAGRPLLVIAEEVEGEALATLVVNTIRGILKVVAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_STRU0 (60 kDa chaperonin OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 125/245 (51.02%), Postives = 172/245 (70.20%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VL + I++ GL +VT+GANP+ ++RGI+K     VEEL+  A+P+ G++ I  VA +S+   + +G  I++A+++VG DGV+                GM+ DRGY+S   VT+ EK++ + EN  +L+TD K+S I++I+PLLE+  +   PLLIIA DV GEAL TLV+NK+RG  NV A+KAPGF
Sbjct:   36 NVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIEKATSAAVEELKAIAQPVSGKEAIAQVAAVSS-RSEKVGEYISEAMERVGNDGVITIEESRGMETELEVVEGMQFDRGYLSQYMVTDNEKMVADLENPFILITDKKVSNIQEILPLLEEVLKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_RHILV (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae GN=groL PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 123/245 (50.20%), Postives = 172/245 (70.20%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV++D+ FG+P++  DGV++A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V++L+ +A+ I   +++  V TISA  D  +G  IA+A+ KVG +GV+                GM+ DRGY+SP FVTNPEK+I + E+  +L+ + K+S ++ ++P+LE   Q   PLLI+A DV GEALATLVVNKLRG L +AA+KAPGF
Sbjct:   37 NVIIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGNKAVAAGMNPMDLKRGIDLAVADVVKDLQAKAKKISTSEEVAQVGTISANGDKQVGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ENTAS (60 kDa chaperonin (Fragment) OS=Enterobacter asburiae GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 128/245 (52.24%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PL+IIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ENTAG (60 kDa chaperonin (Fragment) OS=Enterobacter agglomerans GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 128/245 (52.24%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PL+IIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVASAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_BUCRP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 125/245 (51.02%), Postives = 167/245 (68.16%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA++LA+ I+  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA  D+ +G +IA+A++KVG DGV+                GM+ DRGY+SP F+  PE  +VE EN  +L+ D KIS +++++P+LE   +   PLLII+ D+ GEALATLVVN  RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKNLSVPCSDSKAITQVGTISANADEKVGALIAEAMEKVGNDGVITVEEGTGLQNELEVVKGMQFDRGYLSPYFINKPETGVVELENPYILMADKKISNVREMLPILESVAKSGKPLLIISEDLEGEALATLVVNSTRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_BAUCH (60 kDa chaperonin OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 127/245 (51.84%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V G VEEL++ + P      I  V TISA +D+ +G +IA+A++KVG  GV+                GM+ DRGY+SP F+   E   VE EN  +L+ D KIS I++++P+LE   +   PLL+IA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIGAVEELKRLSVPCADSKAIAQVGTISANSDEKVGILIAEAMEKVGKKGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFINKQENGTVELENPFILLADKKISNIREMLPILEAVAKSSKPLLVIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_AGRVS (60 kDa chaperonin OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 124/245 (50.61%), Postives = 173/245 (70.61%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV++D+ FG+P++  DGV++A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V++L+ +A+ I   +++  V TISA  D  +G  IA+A+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A VL+ + K+S ++ ++P+LE   Q   PL+IIA DV GEALATLVVNKLRG L +AA+KAPGF
Sbjct:   37 NVIIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGNKAVAAGMNPMDLKRGIDLAVAEVVKDLQAKAKKISTSEEVAQVGTISANGDTQVGKDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYVLLHEKKLSNLQAMLPVLEAVVQTGKPLVIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ACIBL (60 kDa chaperonin OS=Acidobacteria bacterium (strain Ellin345) GN=groL PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 131/256 (51.17%), Postives = 179/256 (69.92%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTV-----------HGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ FGSP +  DGVT+A+ IEL D +EN GA +++EVASKT+D AGDGTTTA+VLA+ I + G+ +V +G+NP++LKRGIDK V           + +   L+K ++P+ G + I  V TISA ND+ IG +IA+A+ KVG DGV+                GM+ DRGY+SP FVT+PE++    EN  +L+ + K+S++KD++PLLE+  +   PL+IIA DV GEALATLVVNKLRG LNVAA+KAPGF
Sbjct:   36 NVVIDKKFGSPLITKDGVTVAKEIELKDTLENMGAQMVKEVASKTSDIAGDGTTTATVLAQAIYREGVKNVAAGSNPMALKRGIDKAVTAVCGYNDAEGNRIPGALDKFSKPVTG-EMIAQVGTISANNDETIGKIIAEAMKKVGKDGVITVEESKTMETQLEVVEGMQFDRGYLSPYFVTDPERMEAVLENPYILIHEKKVSSMKDLLPLLEQIAKGGRPLVIIAEDVEGEALATLVVNKLRGTLNVAAVKAPGF 290          
The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_MYXXD1.212e-6350.6160 kDa chaperonin 1 OS=Myxococcus xanthus (strain ... [more]
CH60_VEREI1.583e-6351.4360 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_STRU01.583e-6351.0260 kDa chaperonin OS=Streptococcus uberis (strain ... [more]
CH60_RHILV1.583e-6350.2060 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]
CH60_ENTAS1.583e-6352.2460 kDa chaperonin (Fragment) OS=Enterobacter asbur... [more]
CH60_ENTAG1.583e-6352.2460 kDa chaperonin (Fragment) OS=Enterobacter agglo... [more]
CH60_BUCRP1.583e-6351.0260 kDa chaperonin OS=Buchnera aphidicola subsp. Rh... [more]
CH60_BAUCH1.583e-6351.8460 kDa chaperonin OS=Baumannia cicadellinicola sub... [more]
CH60_AGRVS1.583e-6350.6160 kDa chaperonin OS=Agrobacterium vitis (strain S... [more]
CH60_ACIBL1.583e-6351.1760 kDa chaperonin OS=Acidobacteria bacterium (stra... [more]

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Properties
Property NameValue
Genbank descriptionC04011C04SK FlavFr1 Citrus clementina cDNA clone C04011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bp
GAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGA
GTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGG
TGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTG
ATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGA
CTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGAT
TGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGC
CTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGG
AATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGG
TCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTG
TTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAG
TTTGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGT
GCTGGTCACGGATCANAAAATTTCAGCAATAAAGGATATAATTCCCTTGT
TAGAGAAGACCACACAATTGAGAGCACCATTGCTTATAATTGCTGANGAT
GTCACAGGAGAGGCTTTGGCTACGTTAGTCGTCAACAAGCTCAGGGGCAT
CCTTAATGTTGCTGCCATTAAAGCTCCTGGTTTTGG
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