CX292162

Overview
NameCX292162
Unique NameCX292162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_DEIRA (60 kDa chaperonin OS=Deinococcus radiodurans GN=groL PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 8.109e-68
Identity = 134/245 (54.69%), Postives = 177/245 (72.24%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FGSP +  DGVT+A+ +EL D +EN GA L++EVASKTND  GDGTTTA+VL + I+K GL +V +GANP++LKRGIDK V   +EE++K A  +E  + IK VA ISA ND+ +G  IA A+DKVG +GV+                GM+ D+G+I+P F+TNPEK+    E+A +L+ + KIS +KD++P+LEK  Q   PLLIIA DV GEALATLVVNKLRG LN+AA+KAPGF
Sbjct:   36 NVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKEVASKTNDITGDGTTTATVLGQAIVKEGLRNVAAGANPLALKRGIDKAVAVAIEEIKKLAVSVEDSEAIKKVAGISA-NDETVGQEIASAMDKVGKEGVITIEESKGFDTEVDVVEGMQFDKGFINPYFITNPEKMEAVLEDAYILINEKKISNLKDMLPVLEKVAQTGRPLLIIAEDVEGEALATLVVNKLRGTLNIAAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.059e-67
Identity = 130/245 (53.06%), Postives = 175/245 (71.43%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV++++ FGSP +  DGVT+A+ IEL D  EN GA L++EVASKT+D AGDGTTTA+VLA+ I + G   V +G NP+ +KRGID  V  +V EL+K ++PI+   +I  V TISA ND  IG +IA+A++KVG +GV+                GM+ DRGY+SP FVT+PE++    ENA +L+ D KIS +KD++P+LE+T +   PLLIIA D+ GEALATLVVNKLRG+LN+ A+KAPGF
Sbjct:   36 NVIIEKSFGSPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDSAVETIVAELQKISKPIKDHKEIAQVGTISANNDKTIGGIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENANILIHDKKISNMKDLLPILEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_FLAJ1 (60 kDa chaperonin OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=groL PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.059e-67
Identity = 132/246 (53.66%), Postives = 178/246 (72.36%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV++ + FG P V  DGV++A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I+K GL +V +GANP+ LKRGIDK V  +V +L K+A+ +    D I+ +A+ISA ND++IG +IA A  KVG +GV+                GM+ DRGY+SP FVTNPEK+ VE ++  +L+ D K+S++K+++P+LE   Q   PLLIIA DV GEAL+TLVVNKLRG L +AA+KAPGF
Sbjct:   36 NVIIGKSFGGPTVTKDGVSVAKEIELKDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGIDKAVETIVADLAKQAKVVGSDSDKIQQIASISANNDEVIGELIATAFAKVGKEGVITVEEAKGTDTFVDVVEGMQFDRGYLSPYFVTNPEKMEVELDSPYILLYDKKVSSLKELLPVLEPVAQSGKPLLIIAEDVDGEALSTLVVNKLRGALKIAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.059e-67
Identity = 134/245 (54.69%), Postives = 173/245 (70.61%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV++D+ FG+P    DGVT+A+ IELAD +EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+SP FVTNPE +  E E+  +L+ D KI  +K+++P+LEK+ Q   PLLIIA D+ GEALATLVVNKLRG L V A+KAPGF
Sbjct:   37 NVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAEIEDPLILIHDKKIGNMKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.059e-67
Identity = 130/245 (53.06%), Postives = 173/245 (70.61%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ FGSP +  DGVT+A+ IEL DP EN GA L+REV+SKTND AGDGTTTA+VLA  I + GL +VT+GANP+SL+RGI K    +VEEL+K ++P++   ++  VAT+SA  D  IG +IA+A+DKVG DG +                GM+ D+GY+SP FVTN E +    EN  +L+ + KI+ +KD +PLLEK  +   P L+IA D+ GEALATLVVN+LRG+LN+ A+KAPGF
Sbjct:   36 NVVIDKKFGSPLITKDGVTVAKEIELEDPFENMGAQLVREVSSKTNDVAGDGTTTATVLAESIYREGLRNVTAGANPISLQRGIMKAADSVVEELKKISKPVDSSKEVAQVATVSANWDAEIGNIIAEAMDKVGKDGTITVEEAKGIETTLDVVEGMQFDKGYLSPYFVTNAETMEAVLENPYILIHEKKINNLKDFLPLLEKVAKSGRPFLVIAEDIEGEALATLVVNRLRGVLNICAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.059e-67
Identity = 131/245 (53.47%), Postives = 176/245 (71.84%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV E++ +A PI   + I  V TISAGND+ +G MIADA+DKVG +GV+                GM  D+GYISP F T+ E++    +   +L+TD KI  ++D++P+LE+  +   PLLIIA D+  EALATLVVN+LRG+LNVAA+KAPGF
Sbjct:   36 NVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVAEIKDKANPISDSNAIAQVGTISAGNDEEVGRMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVLDEPYILLTDKKIGLVQDLVPVLEQIARTGKPLLIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ACIF5 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groL PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.383e-67
Identity = 129/245 (52.65%), Postives = 181/245 (73.88%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++A+ IELAD  EN GA +++EVAS+ +D AGDGTTTA+VLA+ II+ GL +V +G NP+ LKRGIDK+V  +VEEL+K+++P + + ++  V TISA +DD IG +IA+A++KVG +GV+                GM+ DRGY+SP FV N +K++ E EN  +L+ D KIS+I+D++P+LE+  +   PLLI+A DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASQASDEAGDGTTTATVLAQAIIREGLKAVIAGMNPMDLKRGIDKSVIVVVEELKKQSKPCKTQKEVAQVGTISANSDDSIGKIIAEAMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENPYILLHDKKISSIRDMLPILEQVAKSSRPLLIVAEDVEGEALATLVVNTMRGIIKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ACIF2 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groL PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.383e-67
Identity = 129/245 (52.65%), Postives = 181/245 (73.88%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++A+ IELAD  EN GA +++EVAS+ +D AGDGTTTA+VLA+ II+ GL +V +G NP+ LKRGIDK+V  +VEEL+K+++P + + ++  V TISA +DD IG +IA+A++KVG +GV+                GM+ DRGY+SP FV N +K++ E EN  +L+ D KIS+I+D++P+LE+  +   PLLI+A DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASQASDEAGDGTTTATVLAQAIIREGLKAVIAGMNPMDLKRGIDKSVIVVVEELKKQSKPCKTQKEVAQVGTISANSDDSIGKIIAEAMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENPYILLHDKKISSIRDMLPILEQVAKSSRPLLIVAEDVEGEALATLVVNTMRGIIKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 136/245 (55.51%), Postives = 175/245 (71.43%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+                GM+ DRGYISP FVT+ EK+ V  +   +L+TD K+SA+K +IP+LEK  Q   PLL+IA DV GEAL TLV+NKL+G L   A+KAPGF
Sbjct:   36 NVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVERAVEEIKKLSKKLSGREDIAHVAAISA-NSPEIGELIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVTDAEKMEVVLKEPSILITDRKLSAVKPLIPILEKVAQTGKPLLVIAEDVEGEALTTLVLNKLKGTLQSCAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 131/245 (53.47%), Postives = 174/245 (71.02%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV+LD+ FGSP +  DGV++A+ IEL D +EN GA L++EVASKT D AGDGTTTA+VL + I   GL +V +GANP+ LKRGIDK V  ++ +L+ +++ I   ++I  VATISA ND  IG MIA A+DKVG DGV+                GM+ DRGY+SP FVTN +K+ VE +   +L+ D K+S++K+++P+LE+  Q   PLLIIA DV GEALATLVVNK+RG L +AA+KAPGF
Sbjct:   36 NVILDKKFGSPAITKDGVSVAKDIELKDAIENMGAQLVKEVASKTADQAGDGTTTATVLTQAIFNAGLKNVAAGANPMDLKRGIDKAVSAIIADLKVQSKKISNSNEIAQVATISANNDHEIGKMIAHAMDKVGKDGVITVEEAKGTETEVKTVEGMQFDRGYLSPYFVTNTDKMEVELDRPYILIYDKKVSSMKELLPILEQVVQSGRPLLIIAEDVDGEALATLVVNKIRGALKIAAVKAPGF 280          
The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DEIRA8.109e-6854.6960 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]
CH60_GEOMG1.059e-6753.0660 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_FLAJ11.059e-6753.6660 kDa chaperonin OS=Flavobacterium johnsoniae (st... [more]
CH60_CHLL21.059e-6754.6960 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH60_AKKM81.059e-6753.0660 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH602_SYNPW1.059e-6753.4760 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH60_ACIF51.383e-6752.6560 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH60_ACIF21.383e-6752.6560 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH60_THENE1.806e-6755.5160 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_CYTH31.806e-6753.4760 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC04011C04SK FlavFr1 Citrus clementina cDNA clone C04011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bp
GAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGA
GTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGG
TGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTG
ATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGA
CTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGAT
TGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGC
CTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGG
AATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGG
TCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTG
TTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAG
TTTGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGT
GCTGGTCACGGATCANAAAATTTCAGCAATAAAGGATATAATTCCCTTGT
TAGAGAAGACCACACAATTGAGAGCACCATTGCTTATAATTGCTGANGAT
GTCACAGGAGAGGCTTTGGCTACGTTAGTCGTCAACAAGCTCAGGGGCAT
CCTTAATGTTGCTGCCATTAAAGCTCCTGGTTTTGG
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