CX292198

Overview
NameCX292198
Unique NameCX292198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  230 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 502
            +A  KL+V+DF A WC PCK+++P L ELA +    V+ LKV+VDE + +  E+ V +MPTFV  K G VL+  VG   D+L   +EKHA V
Sbjct:   17 LAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKHAGV 108          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  236 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            A  L+++DF A WC PCK+++P+L  LA +LP V  LKVD+D     AE+++V ++PT +L K+GK ++R VG K KD L   + KH
Sbjct:   15 ASGLVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  215 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 496
            +    IA  KL+VVDF A+WC PCK+++P++ + +++ P   F K+DVDEL  VA++  V AMPT +L K GK + ++VGA    ++ A+  +A
Sbjct:   10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  239 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATVE 505
            +K+I++DF A+WC PCK ++P+  ELA     +IF KVDVDE + +  ++ V+ MPTF+ TK G  ++ + G  +DEL+  V +H + +
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVSAQ 115          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEK 490
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATINE 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVE 487
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIK 102          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  236 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            A  L++VDF A WC PCK+++P+L  LA +LP V  LK+D+D     AE++ V ++PT +L K+GK ++R VG K KD L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEK 490
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 493
            A  KLIVVDF+A+WC PCK++ P    + +K P V+F+++DVD+ + VA    V+ MPTF   K  + +    GA K++L+ A++K+
Sbjct:   18 AGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  212 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 496
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+ ++ ++A
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105          
The following BLAST results are available for this feature:
BLAST of CX292198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIOT_DROME8.051e-1747.83Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO_CHLTR1.793e-1645.98Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
TRX1_YEAST3.059e-1641.49Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO1_CAEEL3.995e-1640.45Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_SHEEP5.218e-1643.02Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_HORSE5.218e-1643.53Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_CHLMU5.218e-1645.98Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_PIG6.815e-1643.02Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_OPHHA6.815e-1641.38Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_MOUSE6.815e-1641.24Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC04011F07SK FlavFr1 Citrus clementina cDNA clone C04011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292198 ID=CX292198; Name=CX292198; organism=Citrus clementina; type=EST; length=713bp
CAAGAAATAGATATTTCCGATACATATATCAAATTGAACATTCGGCGTGC
TGCTCGCTATTTATAGAGATCCAAGATTGCAAGAGTTCCGTCACCAAACA
CAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAACTTGTGAT
CATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCACACTGTTG
AATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAAACTGATA
GTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGATGTCTCC
AATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTCTTGAAGG
TGGATGTTGATGAATTGAAGTCTGTCGCTGAGGAATGGGCTGTGGAAGCC
ATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGCAGAGGATTGT
GGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCACGCAACTG
TTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTACATGAATCTCA
CTGGTCTTTTATTGTAAGATGTGTGTTTGTGGTTGCTTAATGTAAGAATA
TGGTACCATGTTTAACAGGCCTGTATATATGAATAAATGANCATCTTCTA
CCACACCGTCTTTGGCTTCTGAAAGTTTATTTCGTAGGCATGTTTGTAGT
AGCAAATGAAATT
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