CX292208

Overview
NameCX292208
Unique NameCX292208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.404e-69
Identity = 133/210 (63.33%), Postives = 164/210 (78.10%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +K S+S L + +L+GK+V VRVD NVPL+++  ITDD R+RAA+PTI+YL+ H AKVIL++H GRPKG V  K  L P+  RLSELLG  V + N CIG+E       +  G VLLLENVRF  EEEKND EFAKKLAS AD+YVNDAFG+AHRAHAST+GV  +L PSVAGFL++KEL YL GA+ +PK+P AAIVGGSKVS+KIGV++
Sbjct:    2 SKLSLSSLDKTNLEGKKVLVRVDFNVPLNEDGQITDDTRIRAAIPTIEYLINHSAKVILAAHFGRPKGQVNEKMRLTPVAARLSELLGQNVALTNSCIGDEAVAQSNSLSNGDVLLLENVRFFGEEEKNDLEFAKKLASHADMYVNDAFGAAHRAHASTQGVTNYLSPSVAGFLLEKELKYLQGAIDSPKRPLAAIVGGSKVSSKIGVLD 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNSC (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9605) GN=pgk PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.395e-69
Identity = 137/210 (65.24%), Postives = 160/210 (76.19%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S++ L   DL GKRV VRVD NVPL+D   ITDD R+RAA+PTI  L+G GAKVILS+H GRPKG V     L P+  RLSELLG  V   + CIG + E  V  +  G V+LLENVRF  EEEKN+  FA+KLA LA++YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV++
Sbjct:    2 AKRSLASLNAGDLSGKRVLVRVDFNVPLNDTGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVGAMANGDVVLLENVRFFAEEEKNEAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLD 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNPW (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH7803) GN=pgk PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.395e-69
Identity = 137/210 (65.24%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S++ L   DL GKRV VRVD NVPL+D   ITDD R+RAA+PTI  L+G GAKVILS+H GRPKG V     L P+  RLSELLG  V   + CIG + E  V  + +G V+LLENVRF  EEEKN+  FA+KLA LA++YVNDAFG+AHRAHASTEGV KFLKP+VAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLASLNAGDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVGAMADGDVVLLENVRFFAEEEKNEAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPAVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNPX (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH8102) GN=pgk PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.085e-69
Identity = 137/210 (65.24%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S++ L   DL GKRV VRVD NVPL++   ITDD R+RAA+PTI  L+G GAKVILS+H GRPKG V     L P+  RLSELLG  V   + CIG + E  V  + +G V+LLENVRF  EEEKND  FA+KLA LA++YVNDAFG+AHRAHASTEGV KFLKP+VAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLASLNAGDLSGKRVLVRVDFNVPLNEAGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVNAMADGDVVLLENVRFFAEEEKNDAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPAVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.085e-69
Identity = 132/210 (62.86%), Postives = 163/210 (77.62%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +K S+S L +  L+GK+V VRVD NVPL+++  ITDD R+RAA+PTI+YL+ H AKVIL++H GRPKG V  K  L P+  RLSELLG  V + N CIG+E       +  G VLLLENVRF  EEEKND EFAKKLAS AD+Y+NDAFG+AHRAHAST+GV  +L PSVAGFL++KEL YL GA+ +PK+P AAIVGGSKVS+KIGV++
Sbjct:    2 SKLSLSSLDKTHLEGKKVLVRVDFNVPLNEDGQITDDTRIRAAIPTIEYLINHSAKVILAAHFGRPKGQVNEKMRLTPVAARLSELLGQNVALTNSCIGDEAIAQSNSLSNGDVLLLENVRFFGEEEKNDLEFAKKLASHADMYINDAFGAAHRAHASTQGVTNYLSPSVAGFLLEKELKYLQGAIDSPKRPLAAIVGGSKVSSKIGVLD 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.335e-69
Identity = 135/209 (64.59%), Postives = 169/209 (80.86%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            KK+V+ L ++DL GK+V +R D NVP+D N +ITDD R+RAA+PTI+ L   GAKVIL+SH GRPKG V  K  L  +  RLSE+LG EVK  +DCIG+EV   VAE+ +G V+LLENVRF+  EE NDPEFAK+LAS+ADLYVNDAFG+AHRAHASTEGV K+L PSVAG+L+++EL +L GA+ +P+KP AAI+GGSKVS+KIGVIE
Sbjct:    3 KKTVASLSKSDLSGKKVLMRADFNVPVD-NGSITDDTRIRAALPTIQDLTEKGAKVILTSHFGRPKGKVNEKMRLTLVGERLSEVLGKEVKKCDDCIGDEVTSTVAEMKDGDVVLLENVRFYSGEEGNDPEFAKQLASVADLYVNDAFGTAHRAHASTEGVTKYLSPSVAGYLIEQELKFLQGAIDSPQKPLAAIIGGSKVSSKIGVIE 210          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_DICT6 (Phosphoglycerate kinase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pgk PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.335e-69
Identity = 133/209 (63.64%), Postives = 166/209 (79.43%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AKK++  L++ +LKGKRV VRVD NVP+ + + ITDD R+R A+PTIKYL+  GAKVIL SHLGRPKG      L P+  RLSELLG  VK  NDCIGEEVEK ++ + EG V+LLEN+RF+KEEE NDPEFAKKLA LADLYVNDAFG+AHRAHAST GVA+++ P VAG LM+KE++ +  A+ +P++PF  I+GG+KVS KIGVI+
Sbjct:    2 AKKTILDLQDEELKGKRVLVRVDFNVPIKNGV-ITDDRRIREALPTIKYLIDRGAKVILVSHLGRPKGFQDDLRLDPVAKRLSELLGKPVKKLNDCIGEEVEKEISNMKEGDVVLLENIRFYKEEEANDPEFAKKLAKLADLYVNDAFGTAHRAHASTAGVAQYI-PGVAGLLMKKEIEIMGKALESPERPFICILGGAKVSDKIGVIK 208          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.968e-69
Identity = 135/207 (65.22%), Postives = 163/207 (78.74%), Query Frame = 1
Query:   91 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            ++  +++ D+KGKRVFVRVD NVPL+D   ITDD R+RAAVPTI+YL+  GA  +L+SHLGRPKG    KYSL P   RLSELLG EV  A DCIGEEVE++VAE P G V+LLENVRF+ EEEKNDPEFA KLA L +++VNDAFG+AHRAHAST GVA  +   VAGFLMQKE+D +  A+S+P +PF AI+GG+KVS KI VIE
Sbjct:    2 ALMTVRDIDVKGKRVFVRVDFNVPLEDG-RITDDTRIRAAVPTIRYLVEEGAVAVLASHLGRPKGQRNEKYSLAPCARRLSELLGREVVFAPDCIGEEVERLVAEQPPGSVVLLENVRFYAEEEKNDPEFAAKLARLGEIFVNDAFGTAHRAHASTRGVADHMPVRVAGFLMQKEVDIMGKALSDPDRPFVAIIGGAKVSDKIMVIE 207          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.101e-69
Identity = 133/209 (63.64%), Postives = 165/209 (78.95%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AKK+V  L  ADLKGKR  VRVD NVPLD++  ITDD R+RAA+PTI  L G GA+VIL SHLGRPKG   +  L P+  RL ELLG  V  A+D IG EVE+ V ++ +G VLLLENVRF+ EEEKN+PEFA+KLA LA+LYVNDAFG+AHRAHASTEGVA++L+P+VAG L+QKEL+YL  A+ +P++P  AI+GG+KVS KI +I+
Sbjct:    2 AKKTVEALGAADLKGKRALVRVDFNVPLDESGQITDDTRIRAALPTIGMLTGGGARVILVSHLGRPKGFDDQLRLTPVAKRLGELLGQTVYKADDVIGPEVEEAVKKLEDGDVLLLENVRFYPEEEKNNPEFAQKLAGLAELYVNDAFGTAHRAHASTEGVARYLRPAVAGLLLQKELEYLGKALESPERPVLAIMGGAKVSDKIQLIQ 210          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROMM (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pgk PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.552e-68
Identity = 134/210 (63.81%), Postives = 160/210 (76.19%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S+S L  ADL+ KRV VRVD NVPL++N  ITDD R+RAA+PTI  L+  GA+VILS+H GRPKG +     L P+  RLSELLG  V     C+G + E  V  + +G V+LLENVRF  EEEKND  FA+KLA+LAD YVNDAFG+AHRAHASTEGV KFL PSVAG LM+KEL YL GA+ +PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLSNLSAADLRSKRVLVRVDFNVPLNENGAITDDTRIRAALPTINDLIDKGARVILSAHFGRPKGQINEGMRLTPVAKRLSELLGKNVTKTESCVGSDAEAKVNAMADGDVVLLENVRFFSEEEKNDANFAQKLAALADAYVNDAFGAAHRAHASTEGVTKFLNPSVAGHLMEKELQYLQGAIDDPKRPLAAIVGGSKVSSKIGVLE 211          
The following BLAST results are available for this feature:
BLAST of CX292208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROM91.404e-6963.33Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNSC2.395e-6965.24Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNPW2.395e-6965.24Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNPX4.085e-6965.24Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROM24.085e-6962.86Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_TRIEI5.335e-6964.59Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_DICT65.335e-6963.64Phosphoglycerate kinase OS=Dictyoglomus thermophil... [more]
PGK_SYMTH6.968e-6965.22Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]
PGK_GLOVI9.101e-6963.64Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_PROMM1.552e-6863.81Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011G05SK FlavFr1 Citrus clementina cDNA clone C04011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292208 ID=CX292208; Name=CX292208; organism=Citrus clementina; type=EST; length=709bp
AATCTTCGATCTCATTCCAAAATCTAACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAAATCCCAAGAA
ACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACTAAGATCGGTG
TTATTGAAT
back to top