CX292224

Overview
NameCX292224
Unique NameCX292224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.679e-56
Identity = 104/129 (80.62%), Postives = 110/129 (85.27%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPP+V ID               +QPLPD+DDD  E
Sbjct:   93 FDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.679e-56
Identity = 104/129 (80.62%), Postives = 110/129 (85.27%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPP+V ID               +QPLPD+DDD  E
Sbjct:   93 FDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.193e-56
Identity = 105/129 (81.40%), Postives = 109/129 (84.50%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID               +QPLPD+DDD  E
Sbjct:   93 FDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.193e-56
Identity = 105/129 (81.40%), Postives = 109/129 (84.50%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 388
            FDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID               +QPLPD+DDD  E
Sbjct:   93 FDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 93/125 (74.40%), Postives = 102/125 (81.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 376
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:   93 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 93/125 (74.40%), Postives = 102/125 (81.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 376
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:   92 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 93/125 (74.40%), Postives = 102/125 (81.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 376
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:   87 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 211
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 93/126 (73.81%), Postives = 101/126 (80.16%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPDED+D
Sbjct:   97 FDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 93/126 (73.81%), Postives = 101/126 (80.16%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPDED+D
Sbjct:   97 FDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 93/125 (74.40%), Postives = 102/125 (81.60%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 376
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:   87 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQVDEQLMQQYQQEMERATALPLPDEDD 211
The following BLAST results are available for this feature:
BLAST of CX292224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1_ORYSJ1.679e-5680.62GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI1.679e-5680.62GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN2_ORYSJ2.193e-5681.40GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI2.193e-5681.40GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
GSP2_YEAST1.522e-4974.40GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST1.522e-4974.40GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
GSP1_CANGA1.522e-4974.40GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
RAN3_ORYSJ1.988e-4973.81GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI1.988e-4973.81GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
GSP1_ASHGO1.988e-4974.40GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]

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Properties
Property NameValue
Genbank descriptionC04011H10SK FlavFr1 Citrus clementina cDNA clone C04011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292224 ID=CX292224; Name=CX292224; organism=Citrus clementina; type=EST; length=690bp
GTTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACC
GTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAAC
AAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCA
CAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACA
ACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCT
AACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAAT
CGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCTA
GTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGACA
ATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGAG
GATCTGTTGGGTGTCTTTTGACATGAGCTTTGGATTGAACCATTGCTGGC
TTATTTAGCATTGTGTTTCTTACTCTTGCCTAATTCATGTCAGTCTCTAC
TTGTTTTTGTTTTCGCGTCTACATTCTCTGTTTACCAGCGGGGGAGCCAT
CCAATTTTCTGTAGGATGTTTAAATGATGCCCCATATCCTAGTTCATTTA
TATATTGTGTTGATAATTGAGGATTCATTTACTGCTTACC
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