CX292224

Overview
NameCX292224
Unique NameCX292224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.596e-49
Identity = 93/126 (73.81%), Postives = 101/126 (80.16%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D                  LPD+DDD
Sbjct:   89 FDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.429e-49
Identity = 92/125 (73.60%), Postives = 101/125 (80.80%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 376
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:   87 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.289e-48
Identity = 92/125 (73.60%), Postives = 101/125 (80.80%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 376
            FDVT+R+TYKNVP W RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+PNL FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:   89 FDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D                  LPDEDDD
Sbjct:   89 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDD 215
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2 
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
The following BLAST results are available for this feature:
BLAST of CX292224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN_CAEEL2.596e-4973.81GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
GSP1_CANAL4.429e-4973.60GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
SPI1_SCHPO1.289e-4873.60GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_DANRE1.683e-4871.43GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_XENLA6.395e-4871.43GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT6.395e-4871.43GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB6.395e-4871.43GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE6.395e-4871.43GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA6.395e-4871.43GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN6.395e-4871.43GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC04011H10SK FlavFr1 Citrus clementina cDNA clone C04011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292224 ID=CX292224; Name=CX292224; organism=Citrus clementina; type=EST; length=690bp
GTTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACC
GTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAAC
AAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCA
CAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACA
ACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCT
AACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAAT
CGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCTA
GTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGACA
ATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGAG
GATCTGTTGGGTGTCTTTTGACATGAGCTTTGGATTGAACCATTGCTGGC
TTATTTAGCATTGTGTTTCTTACTCTTGCCTAATTCATGTCAGTCTCTAC
TTGTTTTTGTTTTCGCGTCTACATTCTCTGTTTACCAGCGGGGGAGCCAT
CCAATTTTCTGTAGGATGTTTAAATGATGCCCCATATCCTAGTTCATTTA
TATATTGTGTTGATAATTGAGGATTCATTTACTGCTTACC
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