CX292224

Overview
NameCX292224
Unique NameCX292224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.817e-46
Identity = 86/126 (68.25%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPDE+DD
Sbjct:   90 FDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.333e-45
Identity = 86/126 (68.25%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPDE+DD
Sbjct:   90 FDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.971e-45
Identity = 86/126 (68.25%), Postives = 97/126 (76.98%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D                 PLP+E+DD
Sbjct:   87 FDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXXSQ--PLPDEDDDAF 385
            FDVT+R+TYKN+P WH+DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +  D               +Q   LPDE+DD F
Sbjct:   91 FDVTSRITYKNIPKWHKDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXXSQP--LPDEDDDAF 385
            FDVT+R+TYKN+P WH+DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +     D               +Q   LPD++DD F
Sbjct:   91 FDVTSRITYKNIPKWHKDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 379
            FDVT+R++YKNVP WH DL RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D               + PLP+++DD
Sbjct:   86 FDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 70/101 (69.31%), Postives = 87/101 (86.14%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 304
            FDV++R+TYKNVP W+RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QID
Sbjct:   89 FDVSSRITYKNVPNWYRDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 74/120 (61.67%), Postives = 86/120 (71.67%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 361
            FDVTAR TY N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVES     PE QID               +QPL
Sbjct:   93 FDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLP 364
            FDV +  TY NV  WHRDL RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V                  S+PLP
Sbjct:   90 FDVASSNTYNNVKRWHRDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210          
BLAST of CX292224 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 2
Query:    2 FDVTARLTYKNVPTWHRDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDED 373
            FDVT R+TYKNV +W+RD+ R+C             + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++ +D               + PLPD+D
Sbjct:   92 FDVTNRVTYKNVESWYRDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226          
The following BLAST results are available for this feature:
BLAST of CX292224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RANT_RAT7.817e-4668.25GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE1.333e-4568.25GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_NEUCR2.971e-4568.25GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RAN_TETPY2.062e-3856.82GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_TETTH5.079e-3755.22GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_DICDI1.131e-3655.56GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN_PLAFA7.334e-3669.31GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAN4_ARATH1.383e-3461.67GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RANL_DROME2.699e-3052.89GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA6.880e-2642.22GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionC04011H10SK FlavFr1 Citrus clementina cDNA clone C04011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292224 ID=CX292224; Name=CX292224; organism=Citrus clementina; type=EST; length=690bp
GTTTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACC
GTGATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAAC
AAGGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCA
CAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACA
ACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCT
AACTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAAT
CGATTTGGCTGCTCAGCAACAACATGAAGCTGAACTTGCTGCTGCTGCTA
GTCAACCTCTCCCAGATGAAGATGATGACGCCTTCGAGTGAAAGAAGACA
ATGGATCGTGTGATTATTGGAGTGAAGAGTTCAATATTGATTGTTTTGAG
GATCTGTTGGGTGTCTTTTGACATGAGCTTTGGATTGAACCATTGCTGGC
TTATTTAGCATTGTGTTTCTTACTCTTGCCTAATTCATGTCAGTCTCTAC
TTGTTTTTGTTTTCGCGTCTACATTCTCTGTTTACCAGCGGGGGAGCCAT
CCAATTTTCTGTAGGATGTTTAAATGATGCCCCATATCCTAGTTCATTTA
TATATTGTGTTGATAATTGAGGATTCATTTACTGCTTACC
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