CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROMS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain AS9601) GN=mnmG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 77/225 (34.22%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQ 690
            EPYR+LTS                      RSE+RL LR DNAD RLTPLG ++GLI+++RW  YQ+K+  + EEK RL   R+                          K+T+E     ++  +   +G  +K S+TL+ LLK+P+  Y  L K+      L  + ++ VEIDIKYEG++ R             + LP +++Y  + TLSLE+RE L+K++P+
Sbjct:  441 EPYRVLTS----------------------RSEYRLTLRGDNADRRLTPLGYQIGLINEKRWSAYQEKMNLLEEEKFRLNNTRL--------------------------KNTDE-----ISKKIELETGSKIKGSTTLKELLKRPNFHYSDLIKYNLNERNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLEARENLNKIKPK 612          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYNR3 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Synechococcus sp. (strain RCC307) GN=mnmG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 78/224 (34.82%), Postives = 110/224 (49.11%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      RSE+RL+LR DNAD RLTPL RELGLID RRW++Y+ K   ++ E +RL+TVR+             +D V P                     V   +G  +K S TL  LL++P      L +HG  +G L    ++  EID+KY G++ R             R +P  +D+Y++TTLS E+RE+L+  +P
Sbjct:  434 EPYRVLTS----------------------RSEYRLVLRGDNADRRLTPLARELGLIDARRWQIYERKQEGIAAETKRLETVRLK-----------VSDPVAPA--------------------VVEQTGAAIKGSITLADLLRRPGFHSNDLVRHGLADGELPVDVREGAEIDVKYSGYLARQTQQIERVQRQGQRLIPSGIDFYSITTLSREARERLTAAQP 604          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROM2 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain MIT 9215) GN=mnmG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 77/225 (34.22%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQ 690
            EPYR+LTS                      RSE+RL LR DNAD RLTPLG ++GLID++RW  Y++K+  + EEK RL   R+                          K+T+E     ++  +   +G  +K S+TL+ LLK+P+  Y  L K+      L  + ++ VEIDIKYEG++ R             + LP +++Y  + TLSLE+RE L+K++P+
Sbjct:  441 EPYRVLTS----------------------RSEYRLTLRGDNADRRLTPLGYQIGLIDEKRWSAYEEKMKLLEEEKLRLNNTRL--------------------------KNTDE-----ISKKIELDTGSKIKGSTTLKELLKRPNFHYLDLIKYNLAKKNLGYSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEARENLNKIKPK 612          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROM0 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain MIT 9301) GN=mnmG PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 77/225 (34.22%), Postives = 112/225 (49.78%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQ 690
            EPYR+LTS                      RSE+RL LR DNAD RLT LG ++GLI+++RW  YQ+K+  + EEK RL   R+                          K+TEE     ++  +   +G  +K S TL+ LLK+P   Y  L K+      L  + ++ VEIDIKYEG++ R             + LP +++Y  + TLSLE+RE L+K++P+
Sbjct:  441 EPYRVLTS----------------------RSEYRLTLRGDNADRRLTQLGYQIGLINEKRWSAYQEKMKLLEEEKFRLNKTRL--------------------------KNTEE-----ISKKIELETGSKIKGSITLKELLKRPDFHYSDLIKYNLTEKNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLEARENLNKIKPK 612          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROM3 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain MIT 9303) GN=mnmG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 80/224 (35.71%), Postives = 109/224 (48.66%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      RSE+RL+LR DNAD RLTPLG +LGLID RRW+++Q K   + +EK+RL+  RI            A+D   P  E                      +G  +K S TL  LL++P +    L +HG  +  L+   ++  EIDIKY G++ R             R LP +LDY  ++TLS E+REKL+ V P
Sbjct:  444 EPYRVLTS----------------------RSEYRLILRGDNADRRLTPLGYQLGLIDARRWQLFQSKQTALEDEKQRLEKQRIK-----------ASDPAAPALEAK--------------------TGAKIKGSITLADLLRRPGVHSADLIEHGLVDPELALGVREGAEIDIKYSGYLQRQQQQIDQLKRQSQRRLPANLDYANISTLSKEAREKLTAVGP 614          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROMM (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain MIT 9313) GN=mnmG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 79/224 (35.27%), Postives = 110/224 (49.11%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      RSE+RL+LR DNAD RLTPLG +LGLID RRW+++Q K   + +EK+RL+  R+            A+D   P  E                      +G  +K S TL  LL++P ++   L +HG  +  L+   ++  EIDIKY G++ R             R LP +LDY  ++TLS E+REKL+ V P
Sbjct:  444 EPYRVLTS----------------------RSEYRLILRGDNADRRLTPLGYQLGLIDARRWQLFQRKQTALEDEKQRLEKQRLK-----------ASDPAAPALEAK--------------------TGATIKGSITLADLLRRPGVRSADLIEHGLVDPELALGVREGAEIDIKYSGYLQRQQQQIDQLKRQSQRRLPANLDYANISTLSKEAREKLTAVGP 614          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROMP (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=mnmG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 76/224 (33.93%), Postives = 111/224 (49.55%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      RSE+RL LR DNAD RLTPLG E+GLID+RRW  ++ K+  + EE  RL+  R+                          K T+E     +A  +   SG  +K S+TL+ LLK+P++ Y    ++   +  L  +  + VEIDIKYEG++ R             + L  +++Y  + TLSLE+RE L+K++P
Sbjct:  440 EPYRVLTS----------------------RSEYRLTLRGDNADRRLTPLGFEIGLIDERRWLAHKKKMKSLKEENSRLENTRL--------------------------KCTDE-----IAKKIELDSGSKIKGSTTLKELLKRPNLHYSDFIRYDLVDKTLPISVIEGVEIDIKYEGYLKRQKNNIDQINRQSLKSLSSEINYDQIDTLSLEARENLNKIKP 610          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SYMTH (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Symbiobacterium thermophilum GN=mnmG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 76/226 (33.63%), Postives = 104/226 (46.02%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRMLTS                      R+E R++LR DNA  RLT  GRE GL+DD RW+V+      +  E+ RL                                 T  G   ++   + RL   P+K   TLE LL++P ++YE L + G G   L  A  + VE  +KY G+I +             R +PP LDY A+T LS+E+REKLS++RP+T
Sbjct:  423 EPYRMLTS----------------------RAEFRMMLRQDNAHLRLTEKGREYGLVDDARWEVFVALRDGIEAERERLAR-------------------------------TVVGPAPEVQRVLERLGSAPLKAGVTLEQLLRRPEVRYEHLVEMGLGRPDLDEAIWREVETQVKYAGYIAKEQQQVDRMRRMEARRIPPTLDYQALTGLSMEAREKLSRIRPET 595          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROMA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus GN=mnmG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 73/226 (32.30%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      RSE+RL+LR DNAD RLTPLG ++GL++D +W ++Q K + + +EK+RL+  RI                                    +A  + + SG  +K S TL +LL++P +    L +H   N  L    ++ VEIDIKY G++ R             R LP +++Y  + TLS E+REKL+  +P+T
Sbjct:  444 EPYRVLTS----------------------RSEYRLILRGDNADRRLTPLGYKVGLVNDYQWNIFQIKQSNMEKEKKRLEQQRIKD-------------------------------SDPIALKIEKESGASIKGSITLANLLRRPGMHMNNLIRHKLANNSLPLDVREGVEIDIKYSGYLKRQNLQIEQIKKQNKRALPSEVNYTNIKTLSQEAREKLNATQPKT 616          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROMT (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain NATL2A) GN=mnmG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 75/226 (33.19%), Postives = 111/226 (49.12%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      RSE+RL+LR DNAD RLTPLG +LGLID+RRWK++  K   +++EK RL+  RI                       + +KS +E         +   +G P+K S TL + L++ +I Y+ L         +    ++ VEIDIKY G++ R             + LP +L+Y  + TLS E+REKL+  +P++
Sbjct:  444 EPYRVLTS----------------------RSEYRLILRGDNADRRLTPLGYQLGLIDERRWKIFNAKQQLINQEKERLEKERIK----------------------ESDKSAKE---------IYSSTGTPIKGSLTLANFLRRTNIHYKDLITFNLTTQSIPLDVEEGVEIDIKYSGYLERQKAQINQLKQQSKKLLPKNLNYNNIETLSKEAREKLTISQPKS 616          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_PROMS7.477e-2834.22tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYNR39.766e-2834.82tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROM29.766e-2834.22tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROM01.842e-2634.22tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROM34.103e-2635.71tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROMM9.140e-2635.27tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROMP3.473e-2533.93tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SYMTH1.011e-2433.63tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROMA1.320e-2432.30tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PROMT5.016e-2433.19tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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