CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PROM1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Prochlorococcus marinus (strain NATL1A) GN=mnmG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24
Identity = 74/226 (32.74%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      RSE+RL+LR DNAD RLTPLG +LGLID+RRW ++  K   +++EK RL                            D E+  E   C   A ++   +G P+K S TL + L++ +I Y+ L  +      +    ++ VEIDIKY G++ R             + LP +L+Y  + TLS E+REKL+  +P++
Sbjct:  444 EPYRVLTS----------------------RSEYRLILRGDNADRRLTPLGYQLGLIDERRWNIFNAKQQLINQEKERL----------------------------DKERIKESDKC---AKEIFSSTGTPIKGSLTLANFLRRTNIHYKDLITYNLTTQSIPLDVEEAVEIDIKYSGYLERQKAQINQLKQQSKKLLPKNLNYNNIETLSKEAREKLTISQPKS 616          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_THIDA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=mnmG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 77/227 (33.92%), Postives = 106/227 (46.70%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT  GR LG++DD RW  +  K   V+ E  RLK            S+W+ N  +LP                  A   T+L GQP++   +L  LL++P++ Y ++L   G G G+      + VEI  KY+G+I R               LPPDLDY  +T LS+E R++L   +P+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLQLREDNADMRLTETGRALGVVDDARWDQFNRKRDEVARETERLK------------SVWV-NPAILP------------------ADAATQLIGQPIEREYSLFDLLRRPNLGYAQVLALPGGGAGVADVGVAEQVEIAAKYQGYIDRQNEEVDKHREQEGLRLPPDLDYTRLTGLSMEVRQRLQTAQPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_BORPE (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Bordetella pertussis GN=mnmG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 76/234 (32.48%), Postives = 104/234 (44.44%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNG--------LLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT +GR LGL+DD RW  +  K   V++E  RLK            S W+ N  VLP    +                   L G+ ++   +L  LLK+P++ YE L +     G        L  +   + VE  +KY G+I R             +P+P D+DY A+T+LS E R+KL   RP+T
Sbjct:  425 EPYRMFTS----------------------RAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLK------------STWV-NPRVLPAHAAEA------------------LLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLEDQVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHRPET 605          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_BORPA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Bordetella parapertussis GN=mnmG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 76/234 (32.48%), Postives = 103/234 (44.02%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAE--------KQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT +GR LGL+DD RW  +  K   V++E  RLK            S W+ N  VLP    +                   L G+ ++   +L  LLK+P++ YE L +     G L             + VE  +KY G+I R             +P+P D+DY A+T+LS E R+KL   RP+T
Sbjct:  425 EPYRMFTS----------------------RAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLK------------STWV-NPRVLPAHAAEA------------------LLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHRPET 605          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_BORBR (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Bordetella bronchiseptica GN=mnmG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 76/234 (32.48%), Postives = 103/234 (44.02%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAE--------KQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT +GR LGL+DD RW  +  K   V++E  RLK            S W+ N  VLP    +                   L G+ ++   +L  LLK+P++ YE L +     G L             + VE  +KY G+I R             +P+P D+DY A+T+LS E R+KL   RP+T
Sbjct:  425 EPYRMFTS----------------------RAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLK------------STWV-NPRVLPAHAAEA------------------LLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHRPET 605          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VARPS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Variovorax paradoxus (strain S110) GN=mnmG PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 78/231 (33.77%), Postives = 102/231 (44.16%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEIL-----DKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E RL LR DNAD RLT  GR+LGL+DD RW  +  K   VS E  RLK            S+W+ N   LP +E +                  R+ G+ ++    L  LL++P + YE L      K+  G+  LS  E + +EI  KY G+I R            +  LP D DY  +  LS E R+KL K RP+T
Sbjct:  430 EPYRMFTS----------------------RAEFRLQLREDNADMRLTEAGRKLGLVDDARWDAFSRKRDTVSRETERLK------------SIWV-NPRNLPAAESE------------------RVLGKAIEHEYNLADLLRRPDVNYETLMSLDGGKYSAGSP-LSEIEIEQIEISAKYSGYIERQHDEVERAAHFENLRLPADFDYSQVKALSFEVRQKLDKHRPET 606          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_NITMU (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mnmG PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 71/227 (31.28%), Postives = 106/227 (46.70%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT +GR LG+++D RW  +  KL  +++E+ RLKT  +S                         KS  E        D  R+ G+ ++   +L  LL++P++ Y E++   G G  ++  A  + VEI  KY+G+I R               LP DLDY  +  LS E ++KL++ +P+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLQLREDNADLRLTEVGRRLGVVNDARWVAFNIKLEAIAQEQNRLKTTWLS------------------------PKSLSE-------TDALRVIGKNIEHECSLHDLLRRPNVSYAELMTLPGAGEPVVDLAAAEQVEIQAKYQGYIERQKDEVARNAYYEDIRLPQDLDYKTVRGLSNEVQQKLNQFKPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_TOLAT (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=mnmG PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 71/227 (31.28%), Postives = 105/227 (46.26%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLTP+GRELGL++D RW  +  KL  +++E++RL+   I   +              P +EG                 + ++   P+   ++LE LL++P + Y +++   G G G+      + +EI +KY G+I R               LP DLDY  +  LS E   KL+  +PQT
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTPVGRELGLVNDERWAFFNHKLEMMAQEQQRLQDTWIQPQH--------------PATEG-----------------LNKILKTPLSRPASLEDLLRRPEVNYQDLMAIEGVGPGIEHPQASEQIEIQVKYAGYIDRQQDEIDKQLRHEETLLPLDLDYSEVPGLSKEVCIKLNDTKPQT 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PSEHT (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mnmG PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 72/227 (31.72%), Postives = 103/227 (45.37%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT  GRELGL++D RW+ Y +K+  +++EK+R+K              W+  D                     +   V  L   P+   ++LE LL++P I+Y +++   G G+   ++A  + VEI  KY G+IVR               LP + DY  ++ LS E   KL   RP T
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADIRLTEKGRELGLVNDERWQAYNEKMEVIAKEKQRIK------------DTWIHKD-------------------HTMIDQVNALLKTPLTREASLEELLRRPEIRYNDLMAIDGLGSEFTNQAALEQVEIHTKYAGYIVRQQDEINKQLRHEQTILPKEFDYKTVSGLSNEVVAKLIDARPDT 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VIBVU (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Vibrio vulnificus GN=mnmG PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 76/227 (33.48%), Postives = 100/227 (44.05%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+EHRLLLR DNAD RLT   RELGL+DD RW  +  K+  + +E++RLK            S WM      P S G                ++ +L   P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            H  LP DLDY  +  LS E   KL+  +P+T
Sbjct:  424 EPYRMFTS----------------------RAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK------------STWMN-----PASTG--------------IEELNQLLKSPMNREASGEDLLRRPEMTYEQLTSLAAFAPALDDLEAAEQVEIQVKYEGYIKRQQDEIEKSLRHEHTKLPADLDYSDVKGLSNEVVLKLNTAKPET 597          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_PROM18.555e-2432.74tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_THIDA5.545e-2333.92tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_BORPE8.007e-2232.48tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_BORPA1.366e-2132.48tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_BORBR1.366e-2132.48tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_VARPS1.784e-2133.77tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_NITMU1.784e-2131.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_TOLAT2.330e-2131.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PSEHT3.043e-2131.72tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_VIBVU3.974e-2133.48tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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