CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_DESVV (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=mnmG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 66/228 (28.95%), Postives = 94/228 (41.23%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAE--KQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+EHRLLLR +NAD+RLT  GR LGL+DD  W+ +  K A                L+S L  L             +  + T +    D+    +RL         +L  +L++P +   + D   F  G+   A+  ++  E  +KY G++ R               LP D+DY  +  L+ E  EKL KVRP T
Sbjct:  429 EPYRMFTS----------------------RAEHRLLLRENNADARLTETGRALGLVDDTHWQRFSTKRA---------------ALHSLLDEL-------------ENRRITPDAAARDI---FSRLGEPAPTKGVSLADILRRPSL--TLPDLAPFWEGVTRFADDVREEAETIVKYSGYLARQQELVARSARMEDTVLPEDMDYTVIPGLTREIVEKLGKVRPHT 601          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_DESHD (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=mnmG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 64/226 (28.32%), Postives = 97/226 (42.92%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVE--IDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      R+E+RL+LR DNAD RLTP GRE+GL+ D RW  +Q K A ++E                + +LW       P++E              LA  +  +   PV    + E L+++P I    + +      L    E+  +E  I+IKY G+I +             R +P ++ Y  +  LS E R++L +V P
Sbjct:  430 EPYRLLTS----------------------RAEYRLILRQDNADLRLTPRGREIGLVKDERWAAFQKKKAAIAE----------------INALWRGT-TFSPLNE-------------HLAEVLAGVHSAPVHGGISGEELMRRPEITINEIKQ--LIPQLAEYDEEALLEAGIEIKYAGYIEKQLAEIERFAKMEERMIPEEIVYDQIKGLSTEGRQRLKEVAP 601          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_DESHY (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Desulfitobacterium hafniense (strain Y51) GN=mnmG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 64/226 (28.32%), Postives = 97/226 (42.92%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVE--IDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      R+E+RL+LR DNAD RLTP GRE+GL+ D RW  +Q K A ++E                + +LW       P++E              LA  +  +   PV    + E L+++P I    + +      L    E+  +E  I+IKY G+I +             R +P ++ Y  +  LS E R++L +V P
Sbjct:  430 EPYRLLTS----------------------RAEYRLILRQDNADLRLTPRGREVGLVKDERWAAFQKKKAAIAE----------------INALWRGT-TFSPLNE-------------HLAEVLAGVHSAPVHGGISGEELMRRPEITINEIKQ--LIPQLAEYDEEALLEAGIEIKYAGYIEKQLAEIERFAKMEERMIPEEIVYDQIKGLSTEGRQRLKEVAP 601          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_CHLCH (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Chlorobium chlorochromatii (strain CaD3) GN=mnmG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 69/226 (30.53%), Postives = 99/226 (43.81%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRI-SGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQ 690
            EPYRM TS                       +EHRLLLR DNAD RL   G  +GL+ + R++  + K+ +++  K  L  +R+ SGL         AN  +  +  G+        + G  A  VT L  +P    + L +   + H Q   +      N L+     + VEID KYEG++ R               +P  LDY+A+  LS E REKL K RP+
Sbjct:  420 EPYRMFTS----------------------SAEHRLLLRHDNADIRLHEFGYRVGLLPEHRYQATRQKIEQINAVKTLLSQIRLESGL---------ANKLLQELEYGE--------VTG--AQQVTTLLKRPRVTLAKLLATSPELHSQLSNIS----NNPLV----YEQVEIDCKYEGYLKRDALVAEKIQRLEAHHIPALLDYHAIAGLSNEGREKLKKHRPE 596          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_FLAJ1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=mnmG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 60/226 (26.55%), Postives = 101/226 (44.69%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+R LLR DNAD RLTP+  E+GL  + R +  + KL   +E ++ +   + + +  +  +  +      P+S+GD                + ++  +P      LE +LK     +E +D +   N L     +Q V I +KY G+I +               +P + DY  + ++S+E+++KLSK+RP T
Sbjct:  423 EPYRMFTS----------------------RAEYRTLLRQDNADFRLTPMSFEIGLASEDRMRRMEHKL---NESEKMVAFFKETSVTVAETNPILIEKESAPISQGD---------------KMFKVFSRP---QIELEDMLK-----FEKVDSYIKENNLDEEIVEQAV-IQVKYSGYIEKERNNADKLNRLEEVKIPENFDYNKIKSMSIEAKQKLSKIRPVT 599          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_DESVV1.369e-1328.95tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_DESHD1.369e-1328.32tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_DESHY1.788e-1328.32tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_CHLCH8.874e-1330.53tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_FLAJ12.186e-1126.55tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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