CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ALTMD (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mnmG PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 73/227 (32.16%), Postives = 101/227 (44.49%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNADSRLT +GRE+GL+DD RW  Y DK+  V  E +RL+   I   +++ P L                                 +   PV    +LE L+++P + Y  L K    G G+      + VEI IKY G+I R            +  LP D+D+  ++ LS E   KL++ RP+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADSRLTAMGREIGLVDDARWAKYNDKMEAVETELQRLRGQWIHPDHAATPQL-------------------------------NTMLKNPVSREHSLEELIRRPEMTYSQLMKIESVGPGIDDPIAAEQVEIQIKYAGYIARQMDEIAKTQRHENTLLPIDMDFSKISGLSNEVVAKLTEARPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PSYA2 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mnmG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 74/226 (32.74%), Postives = 106/226 (46.90%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT  GR+LGL+DD RW+ Y++K+  ++ E  RLK             +W       P++               L A VT  +G+ +   ST   LLK+P I +  +     G+ + S+  +Q +EI +KY G+I R            +  LP D DY  ++ LS E  +KL++VRP T
Sbjct:  427 EPYRMFTS----------------------RAEYRLLLREDNADQRLTETGRKLGLVDDVRWQAYEEKMEAIASETSRLK------------DIW-----ATPINA--------------LGAQVTAQTGEVLSKESTAYDLLKRPQIHFNDIAAI-TGSEVDSQVGEQ-IEISVKYAGYIDRQQEDIDQMKRLENTALPMDFDYSVVSGLSNEIVQKLAQVRPST 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ENT38 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Enterobacter sp. (strain 638) GN=mnmG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 73/225 (32.44%), Postives = 101/225 (44.89%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYE-ILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL R+  E++RLK+  ++ L                                D  A+V      P+   ++ E LL++P + YE ++    F  GL      + VEI IKYEG+I R            +  LP  LDY  +T LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIETERQRLKSTWVNPL-------------------------------ADSVAEVNAHLAAPLSREASGEDLLRRPGMTYEQLVQMTPFAPGLDDAEAAEQVEIQIKYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKP 595          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_AERHH (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mnmG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 72/227 (31.72%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYE-ILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT +GRELGL+DD RW  +  K+ +V +E++R+++  I   + SL +                               V  L   P+    +LE LL++P + Y+ ++   G G  L   A    VEI IKY G+I R            +  LP D++Y  +  LS E   KL+  +PQT
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTGIGRELGLVDDERWGKFNAKMEQVEQERQRMRSTWIHPQHPSLEA-------------------------------VNALVNTPLTREQSLEELLRRPEVTYDALMAIEGVGPALPDTAAADQVEIQIKYAGYIERQHDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPQT 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_MARAV (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=mnmG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 75/229 (32.75%), Postives = 105/229 (45.85%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSG---QPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW+ + +K   +++E+ RL++ RI                           +TE G          R +G   QP+    +L  LL++P I Y+ + + G           Q VEI+IKYEG+I R            +  LP DLDY  +  LS E ++KL  VRP+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLILREDNADLRLTETGRKLGLVDDERWQKFSEKCEGIAKERSRLESTRI-------------------------HPNTEAG---------ERANGYLKQPMTRDQSLAELLRRPEIVYDHIAEIGAERAEDPNVADQ-VEIEIKYEGYISRQADEIERLRKNENTALPLDLDYDVIGGLSNEIKQKLKDVRPET 595          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VIBVY (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Vibrio vulnificus (strain YJ016) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 75/227 (33.04%), Postives = 100/227 (44.05%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+EHRLLLR DNAD RLT   RELGL+DD RW  +  K+  + +E++RLK            S WM      P S G  E              + +L   P+   ++ E LL++P + Y+ L     F   +      + VEI +KYEG+I R            H  LP DLDY  +  LS E   KL+  +P+T
Sbjct:  424 EPYRMFTS----------------------RAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK------------STWMN-----PASTGIDE--------------LNQLLKTPMNREASGEDLLRRPEMTYDQLTSLTAFAPAIDDLEAAEQVEIQVKYEGYIKRQQDEIEKSLRHEHTKLPADLDYSDVKGLSNEVVLKLNTAKPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VIBHB (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 74/227 (32.60%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT   RELGLIDD RW  + +K+  +  E++RLK            S WM      P S G  E              + +L   P+   ++ E LL++P I Y ++     F   L  +   + VEI +KY+G+I R            H  LP DLDY  +  LS E   KL++ +P++
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTEKARELGLIDDARWARFNEKIENMETERQRLK------------STWMN-----PNSAGIDE--------------LNKLLKTPMAREASGEDLLRRPEISYSDLTQLDAFAPALEDQQASEQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLTEAKPES 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_KLEP7 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 76/227 (33.48%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYE-ILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GRELGL+DD RW  Y +KL  +  E++RLK            S W     V P +E               A +V      P+   ++ E LL++P + YE ++    F  GL  R   + VEI +KYEG+I R            +  LP  LDY  +T LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRLK------------STW-----VNPQAES--------------ANEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFTPGLEDRQAAEQVEIQVKYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSS 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SHIDS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 72/225 (32.00%), Postives = 101/225 (44.89%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK+ R++      PS                          + AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTRVT------PS-------------------------AEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PSYWF (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Psychrobacter sp. (strain PRwf-1) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 72/226 (31.86%), Postives = 103/226 (45.58%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT +GR+LGL+DD RW+ YQ K+  ++ E  RLK             LW      L      G+K TE+             +G+ +   +T   LLK+P++ +   D        ++    + +EI +KY G+I R            +  LP D DY A++ LS E  +KL+ +RP T
Sbjct:  438 EPYRMFTS----------------------RAEYRLLLREDNADQRLTEIGRKLGLVDDTRWQAYQQKMESMATESARLK------------DLWATPHNEL------GKKFTEQ-------------TGEVLSKEATAYDLLKRPNVGFN--DIAAVTGAQVAADVGEQIEISVKYAGYIDRQQEDIDQMKRLENTQLPADFDYKAVSGLSNEIVQKLNDIRPAT 608          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_ALTMD3.974e-2132.16tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PSYA25.190e-2132.74tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ENT385.190e-2132.44tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_AERHH6.779e-2131.72tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_MARAV8.853e-2132.75tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_VIBVY1.510e-2033.04tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_VIBHB1.510e-2032.60tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_KLEP71.510e-2033.48tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SHIDS1.972e-2032.00tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PSYWF1.972e-2031.86tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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