CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_LARHH (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Laribacter hongkongensis (strain HLHK9) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 76/227 (33.48%), Postives = 104/227 (45.81%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEIL-DKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E RL LR DNAD RLT  GR LGL+ D +W ++  K   V+ E+ RLK+  ++      P L         VSE                 D  R+ GQPV+   +LE LL++P + Y  L     FG   LS A  + VEI +KY+G+I R            H  +P   D+ A++ LS E ++KL+  RP+T
Sbjct:  424 EPYRMFTS----------------------RAEFRLQLREDNADLRLTETGRRLGLVGDAQWDIFCRKRDAVAAERERLKSTWVN------PRL---------VSE----------------EDARRVLGQPVEREYSLEELLRRPGVDYATLATLPAFGGEALSGAVAEQVEIQVKYQGYIDRQHEEVARREATEHVRIPAAFDFSAVSGLSKEVQQKLALHRPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_LACLS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      R+E+RL+LR DNAD RLT +GR++GL+ D +W+ YQ K+A+   E +RL + ++  L                                D    + +L   P+KD+ T    LK+P + Y E++D  G    ++ R   + +E +I YEG+I +             + +P ++D+  + +++ E+R+K  K+ P+T
Sbjct:  427 EPYRLLTS----------------------RAEYRLILRHDNADRRLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKRLNSEKLKPL-------------------------------PDTQEKLGKLGFGPIKDALTGAEFLKRPEVHYDEVIDFIGQAPEVIDRTVIELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPET 600          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_LACLM (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=mnmG PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      R+E+RL+LR DNAD RLT +GR++GL+ D +W+ YQ K+A+   E +RL + ++  L                                D    + +L   P+KD+ T    LK+P + Y E++D  G    ++ R   + +E +I YEG+I +             + +P ++D+  + +++ E+R+K  K+ P+T
Sbjct:  427 EPYRLLTS----------------------RAEYRLILRHDNADRRLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKRLNSEKLKPL-------------------------------PDTQEKLGKLGFGPIKDALTGAEFLKRPEVNYDEVIDFIGQAPEVIDRTVIELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPET 600          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_BORA1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Bordetella avium (strain 197N) GN=mnmG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 79/234 (33.76%), Postives = 106/234 (45.30%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEIL--DKHGFGN-----GLL-SRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT +GRELGL+DD RW V+  K   +  E +RL+            S W+ N  +LP                        L G+ ++    L  LLK+P+I YE L   ++G G      GLL      + VEI IKY G+I R             + +P D+DY A+++LS E R+KL   RP+T
Sbjct:  425 EPYRMFTS----------------------RAEYRLSLREDNADLRLTEIGRELGLVDDIRWDVFNRKRDAIQAEVQRLQ------------STWV-NPRLLPEEPAQA------------------LLGKAIEREYALADLLKRPNISYEALMQARNGAGELLAGPGLLGDDVLAEQVEIQIKYAGYIERQRDEVQKHVVHEQQAIPADIDYDAVSSLSFEVRQKLKTHRPET 605          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERE8 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 71/227 (31.28%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT +GR+LGL+DD RW  +  K+ ++ +E++RL+ +            W     V P SE                A++  +   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDI------------W-----VHPHSEN--------------VAEINAVLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQVKYEGYIARQQEEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPNS 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VIBPA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Vibrio parahaemolyticus GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 75/227 (33.04%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT   RELGLIDD RW  + +K+  +  E++RLK            S W     V P S G  E              + +L   P+   ++ E LL++P I Y ++     F   L  +   + VEI +KY+G+I R            H  LP DLDY  +  LS E   KLS+ +P++
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK------------STW-----VNPNSAGIDE--------------LNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQAAEQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLSEAKPES 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_HAHCH (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Hahella chejuensis (strain KCTC 2396) GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 75/226 (33.19%), Postives = 106/226 (46.90%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT  GRELG+IDD RW+V+ +K   ++ E++RLK            S+W     + P +E    K+ E      L  ++TR          +L  LLK+P + +E L               + +EI +KY G+I R            +  LP DLDY  +  LS E ++KL++VRP+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTEKGRELGMIDDERWRVFCEKREAIAREQQRLK------------SIW-----IQPATE-KARKAAEL-----LETELTR--------EYSLHDLLKRPEMTWEKLSLLDADVAATPYEVAEQLEIQVKYAGYIDRQQEEIERLRRNENMALPADLDYSGIQGLSNEIKQKLTEVRPET 596          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_PECCP (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 71/227 (31.28%), Postives = 100/227 (44.05%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELG++DD RW  + +KL  + +E++RL+ + I                  P SE              L   V  L   P+   +  E LL++P + Y ++     F  GL      + VEI +KYEG+I R            +  LP DLDY  +  LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGMVDDHRWARFNEKLESIEKERQRLRDIHIH-----------------PQSE--------------LLDQVNSLLKTPLSREANGEELLRRPEVDYVQLTALPLFAPGLTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPADLDYKQVNGLSNEVIAKLNDHKPSS 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_LACLA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Lactococcus lactis subsp. lactis GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 62/227 (27.31%), Postives = 105/227 (46.26%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYR+LTS                      R+E+RL+LR DNAD RLT +GR++GL+ D +W+ YQ K+A+   E +RL + ++  L                                D    + +L   P+KD+ T    LK+P + Y E++D  G     + R   + +E +I YEG+I +             + +P ++D+  + +++ E+R+K  K+ P+T
Sbjct:  427 EPYRLLTS----------------------RAEYRLILRHDNADRRLTEIGRQVGLVSDEQWEHYQAKMAQFDREMKRLNSEKLKPL-------------------------------PDTQEKLGKLGFGPIKDALTGAEFLKRPEVHYNEVIDFIGQAPEKIDRTVIELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPET 600          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ERWCT (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Erwinia carotovora subsp. atroseptica GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 70/227 (30.84%), Postives = 100/227 (44.05%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY-EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELG++DD RW  + +KL  + +E++RL+ + +                  P SE              L   V  L   P+   +  E LL++P + Y ++     F  GL      + VEI +KYEG+I R            +  LP DLDY  +  LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH-----------------PQSE--------------LLDQVNSLLKTPLSREANGEELLRRPEVDYAQLTALPLFAPGLTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENALLPADLDYKQVNGLSNEVIAKLNDHKPSS 597          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_LARHH1.972e-2033.48tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_LACLS1.972e-2027.31tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_LACLM1.972e-2027.31tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_BORA11.972e-2033.76tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERE82.576e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_VIBPA2.576e-2033.04tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_HAHCH2.576e-2033.19tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_PECCP3.364e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_LACLA3.364e-2027.31tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ERWCT3.364e-2030.84tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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