CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VIBFM (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Vibrio fischeri (strain MJ11) GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 72/227 (31.72%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYE-ILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT  GR LGL+DD RW  + +K+  + +E++RLK + I+                 P SE   +              V  +   P+   ++ E LL++P + Y+ ++   GFG  L      + VEI +KY G+I R            +  LP DLDY  +  LS E   KLS  +P+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTEQGRTLGLVDDVRWARFNEKVENMEQERQRLKDIWIN-----------------PKSEQVDQ--------------VNAILKTPIAREASGEDLLRRPEVNYQSLVSIDGFGPALEDSQASEQVEIQVKYAGYIQRQRDEIEKSLRHENTKLPFDLDYKEVKGLSNEVVAKLSDAKPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_VIBF1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 72/227 (31.72%), Postives = 102/227 (44.93%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYE-ILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT  GR LGL+DD RW  + +K+  + +E++RLK + I+                 P SE   +              V  +   P+   ++ E LL++P + Y+ ++   GFG  L      + VEI +KY G+I R            +  LP DLDY  +  LS E   KLS  +P+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTEQGRTLGLVDDVRWARFNEKVENMEQERQRLKDIWIN-----------------PKSEQVDQ--------------VNAILKTPIAREASGEDLLRRPEVNYQSLVSIDGFGPALEDSQASEQVEIQVKYAGYIQRQRDEIEKSLRHENTKLPFDLDYKEVKGLSNEVVAKLSDAKPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_RALSO (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Ralstonia solanacearum GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 74/236 (31.36%), Postives = 104/236 (44.07%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEIL----------DKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E RL LR DNAD RLT  GR+LG++DD RW  +  K   VS E  RLK            S W+ N  +LP                  AAD   + G+ ++   +L  LL++P++ YE L          D       LL+   ++ +EI IKY G+I R            +  LP D DY  +  LS+E ++KL++ +P+T
Sbjct:  425 EPYRMFTS----------------------RAEFRLSLREDNADMRLTEAGRDLGVVDDARWDAFNRKRDAVSRETERLK------------STWV-NPAILP------------------AADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPDAPLADEPLLAEQIREQIEIGIKYHGYIARQADEVERLGANENTRLPADFDYKQVRGLSIEVQQKLAQHKPET 607          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_AERS4 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Aeromonas salmonicida (strain A449) GN=mnmG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 71/227 (31.28%), Postives = 100/227 (44.05%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYE-ILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RLLLR DNAD RLT +GRELGL+DD RW  +  K+ +V  E++R+++  I   + SL +                               V  L   P+     LE LL++P + Y+ ++   G G  L   A    VEI IKY G+I R            +  LP D++Y  +  LS E   KL+  +P+T
Sbjct:  424 EPYRMFTS----------------------RAEYRLLLREDNADLRLTAIGRELGLVDDERWGKFNIKMEQVELERQRMRSTWIHPQHPSLEA-------------------------------VNALVNTPLTREQNLEELLRRPEVTYDALMAIEGVGPALSDHAAADQVEIQIKYAGYIERQYDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPET 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_STAS1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 75/228 (32.89%), Postives = 106/228 (46.49%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQY----EILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      R+E+RLLLR DNAD RLT LG ELG+I + R+  + +K A +  E+ RL  +R+             ND V  + E  G                    G  +KD      LL++P + Y    EILD+    + L S  E+Q VEI  KYEG+I +             + +P DLDY  + +L+ E+REKL++V+P
Sbjct:  421 EPYRLLTS----------------------RAEYRLLLRHDNADLRLTDLGYELGMISEERYARFNEKRAMIKAEQERLNGIRVK-----------PNDRVQEIIEAQG--------------------GSRLKDGILALELLRRPEMTYDLILEILDE---SHQLPSDVEEQ-VEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLAEVKP 591          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECO27 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTSLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_BURP8 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 73/236 (30.93%), Postives = 107/236 (45.34%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEIL----------DKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL LR DNAD RLT +GRELG++DD RW  +  K   VS E  RL+T             W+    +          S+EE          T L G+P+    +L  LL++P + Y+ +          D+    + +L    K+ +EI +KY+G+I R            +  LP +LDY  +  LS E+R+KL++ RP+T
Sbjct:  425 EPYRMFTS----------------------RAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERLRTT------------WVNPKTL----------SSEE---------ATALLGKPIDHEYSLADLLRRPGVSYDGICGLREGTCGPDEALAHDDVLLAQIKEQIEIGVKYQGYIERQAGEIERNEAHENTRLPENLDYTEVRGLSFEARQKLTQFRPET 607          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_BACCZ (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Bacillus cereus (strain ZK / E33L) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 69/224 (30.80%), Postives = 105/224 (46.88%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYR+LTS                      R+E+RLLLR DNAD RLT +GRE+GLI + R++ + +K  ++ +EK RL ++ I                  P  E              +   +  + G  +KD      LL++P + YE +         LS   K+ VEI IKYEG+I +            ++ +P D+DY A+++L+ E+R+KL  VRP
Sbjct:  424 EPYRLLTS----------------------RAEYRLLLRHDNADLRLTEIGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK-----------------PRPE--------------VQELIRNIGGSELKDGIRASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRP 594          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPY (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597          
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pseudotuberculosis GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597          
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_VIBFM4.394e-2031.72tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_VIBF14.394e-2031.72tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_RALSO4.394e-2031.36tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_AERS44.394e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_STAS15.738e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECO275.738e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_BURP85.738e-2030.93tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_BACCZ5.738e-2030.80tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPY7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPS7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
back to top