CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPP (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pestis (strain Pestoides F) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPN (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPG (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPE (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pestis GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPB (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERPA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_YERP3 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 71/227 (31.28%), Postives = 101/227 (44.49%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQT 693
            EPYRM TS                      R+E+RL+LR DNAD RLT  GR+LGL+DD RW  +  K+ ++ +E++RL+             +W     V P SE                +++  L   P+   +  E LL++P I Y +L     FG  L        VEI +KYEG+I R            +  LP DLDY  ++ LS E   KL+  +P +
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLR------------DIW-----VHPHSEN--------------VSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQVKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSS 597
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SHISS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Shigella sonnei (strain Ss046) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SHIFL (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Shigella flexneri GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQISGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_SHIF8 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Shigella flexneri serotype 5b (strain 8401) GN=mnmG PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQISGLSNEVIAKLNDHKP 595
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_YERPP7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPN7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPG7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPE7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPB7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERPA7.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_YERP37.495e-2031.28tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SHISS7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SHIFL7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_SHIF87.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
back to top