CX292227

Overview
NameCX292227
Unique NameCX292227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOLI (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli (strain K12) GN=mnmG PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOLC (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOL6 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O6 GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOL5 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOK1 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O1:K1 / APEC GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOHS (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O9:H4 (strain HS) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECODH (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli (strain K12 / DH10B) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECOBW (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli (strain K12 / BW2952) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECO8A (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O8 (strain IAI1) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
[Close]
BLAST of CX292227 vs. ExPASy Swiss-Prot
Match: MNMG_ECO81 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Escherichia coli O81 (strain ED1a) GN=mnmG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 74/225 (32.89%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:   16 EPYRMLTSLGTEKCPTV**SCD*KENTVESRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRISGLYSSLPSLWMANDCVLPVSEGDGEKSTEEGICGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 687
            EPYRM TS                      R+E+RL+LR DNAD RLT +GRELGL+DD RW  + +KL  +  E++RLK            S W     V P +E               AA+V      P+   ++ E LL++P + YE L     F   L      + VEI +KYEG+I R            +  LP  LDY  ++ LS E   KL+  +P
Sbjct:  424 EPYRMFTS----------------------RAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLK------------STW-----VTPSAEA--------------AAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKP 595
The following BLAST results are available for this feature:
BLAST of CX292227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
MNMG_ECOLI7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECOLC7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECOL67.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECOL57.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECOK17.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECOHS7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECODH7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECOBW7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECO8A7.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
MNMG_ECO817.495e-2032.89tRNA uridine 5-carboxymethylaminomethyl modificati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A01SK FlavFr1 Citrus clementina cDNA clone C04013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292227 ID=CX292227; Name=CX292227; organism=Citrus clementina; type=EST; length=695bp
AATTGGCACGAGGGCGAGCCTTACCGCATGTTGACAAGTTTAGGGACAGA
AAAATGCCCCACTGTGTAATGAAGCTGTGACTAGAAGGAGAATACTGTTG
AAAGCCGCTCAGAACATCGATTGCTTCTTAGATCCGATAATGCTGATAGC
CGTCTCACACCTTTGGGTCGTGAACTTGGGTTAATAGATGATAGACGGTG
GAAAGTATACCAGGATAAGCTAGCTCGAGTTTCAGAGGAAAAAAGGCGAT
TGAAAACTGTGAGGATATCAGGTTTGTATTCTTCATTGCCCTCCTTGTGG
ATGGCAAATGATTGTGTCTTACCAGTGAGTGAGGGAGATGGAGAAAAATC
TACAGAGGAGGGAATATGTGGAGATTTGGCTGCTGATGTTACTCGATTGT
CTGGTCAGCCAGTGAAGGACTCGTCAACTCTCGAGAGCCTACTGAAGAAA
CCACATATTCAATATGAAATACTTGATAAGCATGGTTTTGGAAATGGATT
GCTAAGTAGAGCTGAGAAACAATGTGTAGAGATAGACATAAAGTATGAGG
GCTTCATTGTGCGTCAGCAAAGCCAACTTCAACAGATGGTCCATCAACAA
CATAGACCACTTCCTCCGGACTTGGATTACTATGCAATGACAACTTTATC
TCTGGAATCACGTGAGAAACTATCTAAGGTCAGGCCACAGACGAT
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