CX292228

Overview
NameCX292228
Unique NameCX292228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNJB (50S ribosomal protein L28 OS=Synechococcus sp. GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 3
Query:  243 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            +ARR C  T KK N A  +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT++  G+ A+A++A IDL +
Sbjct:    1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTLKAKGIGAMAREAGIDLNQ 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNJA (50S ribosomal protein L28 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 3
Query:  243 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            +ARR C  T KK N A  +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT++  G+ A+A++A IDL +
Sbjct:    1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTLKAKGIGAMAREAGIDLNQ 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_MICAN (50S ribosomal protein L28 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDL 470
            RVC  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW  G R+VKLR+STKA+KTIEK GL   A++  ++L
Sbjct:    3 RVCTMTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWSEGNRWVKLRISTKAIKTIEKKGLAVFAREVGLNL 75          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_ANASP (50S ribosomal protein L28 OS=Anabaena sp. (strain PCC 7120) GN=rpmB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDL 470
            R C  TGKK+N A  VS S+ +T + Q VNLQ K+VWW +G R+VKL+LSTKA+KT+E  GL+A+AK+A I+L
Sbjct:    3 RRCDLTGKKANNAFAVSHSHRRTKRLQQVNLQNKRVWWPSGNRWVKLKLSTKAIKTLEVKGLEAMAKEAGINL 75          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNY3 (50S ribosomal protein L28 OS=Synechocystis sp. (strain PCC 6803) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 3
Query:  243 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            +ARR C  TGKK+N    VS S+ +T K Q  NLQ+K+VWW  G R+V+LRLST A+KT+E  G++A+AK+A I+L K
Sbjct:    1 MARR-CQLTGKKANNGFAVSHSHRRTKKLQQANLQWKRVWWPEGNRFVRLRLSTTAIKTLESKGINAMAKEAGINLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_ACAM1 (50S ribosomal protein L28 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  258 CPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            C  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW   KR+VKLRLSTKA+KT+EK GL A A++A I+L +
Sbjct:    5 CQLTGKKANNAFAVSHSHRRTHKLQEANLQWKRVWWPQEKRWVKLRLSTKAIKTLEKKGLAAFAREAGINLNQ 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_ANAVT (50S ribosomal protein L28 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDL 470
            R C  TGKK+N A  VS S+ +T + Q  NLQ K+VWW +G R+VKL+LSTKA+KT+E  GL+A+AK+A I+L
Sbjct:    3 RRCDLTGKKANNAFAVSHSHRRTKRLQQANLQSKRVWWPSGNRWVKLKLSTKAIKTLEVKGLEAMAKEAGINL 75          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMP (50S ribosomal protein L28 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WW+ GK++V +++STKALK+I+K GLD VAK   +DL K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWVNIKISTKALKSIQKVGLDKVAKTNGVDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM9 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+++K GLD  AK   +DL+K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSVQKVGLDKFAKSNGVDLKK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM2 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK   +DL+K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLQK 77          
The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL28_SYNJB7.230e-1753.8550S ribosomal protein L28 OS=Synechococcus sp. GN=... [more]
RL28_SYNJA7.230e-1753.8550S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_MICAN9.443e-1756.1650S ribosomal protein L28 OS=Microcystis aeruginos... [more]
RL28_ANASP1.233e-1657.5350S ribosomal protein L28 OS=Anabaena sp. (strain ... [more]
RL28_SYNY32.747e-1653.8550S ribosomal protein L28 OS=Synechocystis sp. (st... [more]
RL28_ACAM12.747e-1657.5350S ribosomal protein L28 OS=Acaryochloris marina ... [more]
RL28_ANAVT3.588e-1656.1650S ribosomal protein L28 OS=Anabaena variabilis (... [more]
RL28_PROMP1.781e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM91.781e-1550.6750S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM21.781e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC04013A02SK FlavFr1 Citrus clementina cDNA clone C04013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bp
GGGCTGCACGCGAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTTTA
TTGGGAAACACTTCCAATCTACCCTGTCGCCGCCCACGTCTGTCTCCGAA
GTCCATGGTTAAGGTAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTACTT
CACAACTCAGTGGCATCAAAATTTCGTACCGCCTACCTGACGTGGCCACA
CCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCGCG
TAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGTTT
CCTTCTCTAACCACAAGACAACTAAGCGGCAGTTTGTTAACCTACAGTAT
AAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTATGTGAAGCTGCGTTTGTC
AACAAAGGCATTAAAGACGATAGAGAAAAATGGATTGGATGCTGTTGCTA
AGAAGGCTAGAATAGATCTTCGCAAGGAATGATATAGATGGTCTAACTAT
TTTTACCTATAGCTGTTGGTAAAGCTTGTATGCTCACTGTTTCTCTCGAA
ATTTAATTTCATGTTGCACTGTATCTTCTTTTTGCTTGTTCTGTTGAATT
CTTCCCAATTAAATGAGAATACTGATCATTAAAGCAAAAAAAAAAAAAAA
AAAATCGAGGGGGGGCCCGGTCC
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