CX292228

Overview
NameCX292228
Unique NameCX292228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM0 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK   +DL K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMS (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain AS9601) GN=rpmB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            R C  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK   +DL+K
Sbjct:    3 RACELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLKK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM5 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q VNLQ +++WW+ GK+++ +++STKALK+I+K GLD VAK   +DL K
Sbjct:    3 RVCELTGARANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWINIKISTKALKSIQKVGLDKVAKTNGVDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNPW (50S ribosomal protein L28 OS=Synechococcus sp. (strain WH7803) GN=rpmB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG K+N    VS S+ +T K Q  NLQ +++WW  GKR+V LR++T+ALKTI+K GL A AK   IDL +
Sbjct:    3 RVCQLTGTKANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWVNLRITTRALKTIQKKGLGAYAKSLGIDLAR 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNR3 (50S ribosomal protein L28 OS=Synechococcus sp. (strain RCC307) GN=rpmB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  +GK++N    VS S+ +T K Q VNLQ +++WW  G R+VKLR+ST AL+TI+K GL A AK+  I+L K
Sbjct:    3 RVCQLSGKRANNGMAVSHSHVRTKKLQQVNLQQRRLWWAEGNRWVKLRVSTSALRTIQKKGLGAYAKELGINLAK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMM (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R++KLR+ST+ALKTI+K GL   AK   IDL K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKKGLGVYAKSLGIDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMA (50S ribosomal protein L28 OS=Prochlorococcus marinus GN=rpmB PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  +G ++N    VS S+ +T K Q  NLQ +++WWE GK+++ +R+ST  LKTI+K GLD+ AK   IDL+K
Sbjct:    3 RVCELSGTRANNGMAVSHSHIRTKKLQQANLQKRRLWWEEGKKWLNIRVSTSTLKTIQKKGLDSYAKSQGIDLKK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM4 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpmB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  +G ++N    VS S+ +T K Q  NLQ +K+WWE GK+++K+R++T+ LKTI+K GL++ AK   IDL K
Sbjct:    3 RVCDLSGTRANNGMAVSHSHIRTKKLQQANLQQRKLWWEEGKKWIKVRVTTRTLKTIQKKGLNSYAKAMGIDLSK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM3 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpmB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R++KLR+ST+ALKTI+K GL   AK   IDL K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKKGLGVYAKSLGIDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNSC (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9605) GN=rpmB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R+VKLR++T+ALKTI+K GL A AK   I+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWVKLRVTTRALKTIQKKGLGAYAKSLGINLAK 77          
The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL28_PROM02.326e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROMS3.967e-1550.6750S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM55.181e-1549.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_SYNPW6.767e-1552.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNR38.838e-1552.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_PROMM1.969e-1450.6750S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROMA1.969e-1448.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM41.969e-1448.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM31.969e-1450.6750S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_SYNSC3.358e-1450.6750S ribosomal protein L28 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC04013A02SK FlavFr1 Citrus clementina cDNA clone C04013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bp
GGGCTGCACGCGAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTTTA
TTGGGAAACACTTCCAATCTACCCTGTCGCCGCCCACGTCTGTCTCCGAA
GTCCATGGTTAAGGTAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTACTT
CACAACTCAGTGGCATCAAAATTTCGTACCGCCTACCTGACGTGGCCACA
CCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCGCG
TAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGTTT
CCTTCTCTAACCACAAGACAACTAAGCGGCAGTTTGTTAACCTACAGTAT
AAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTATGTGAAGCTGCGTTTGTC
AACAAAGGCATTAAAGACGATAGAGAAAAATGGATTGGATGCTGTTGCTA
AGAAGGCTAGAATAGATCTTCGCAAGGAATGATATAGATGGTCTAACTAT
TTTTACCTATAGCTGTTGGTAAAGCTTGTATGCTCACTGTTTCTCTCGAA
ATTTAATTTCATGTTGCACTGTATCTTCTTTTTGCTTGTTCTGTTGAATT
CTTCCCAATTAAATGAGAATACTGATCATTAAAGCAAAAAAAAAAAAAAA
AAAATCGAGGGGGGGCCCGGTCC
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