CX292228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM0 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15 Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TG K+N VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD AK +DL K Sbjct: 3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLNK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMS (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain AS9601) GN=rpmB PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15 Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 R C TG K+N VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD AK +DL+K Sbjct: 3 RACELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLKK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM5 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmB PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TG ++N VS S+ +T K Q VNLQ +++WW+ GK+++ +++STKALK+I+K GLD VAK +DL K Sbjct: 3 RVCELTGARANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWINIKISTKALKSIQKVGLDKVAKTNGVDLNK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNPW (50S ribosomal protein L28 OS=Synechococcus sp. (strain WH7803) GN=rpmB PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15 Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TG K+N VS S+ +T K Q NLQ +++WW GKR+V LR++T+ALKTI+K GL A AK IDL + Sbjct: 3 RVCQLTGTKANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWVNLRITTRALKTIQKKGLGAYAKSLGIDLAR 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNR3 (50S ribosomal protein L28 OS=Synechococcus sp. (strain RCC307) GN=rpmB PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15 Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC +GK++N VS S+ +T K Q VNLQ +++WW G R+VKLR+ST AL+TI+K GL A AK+ I+L K Sbjct: 3 RVCQLSGKRANNGMAVSHSHVRTKKLQQVNLQQRRLWWAEGNRWVKLRVSTSALRTIQKKGLGAYAKELGINLAK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMM (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14 Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TG ++N VS S+ +T K Q NLQ +++WW G R++KLR+ST+ALKTI+K GL AK IDL K Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKKGLGVYAKSLGIDLNK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMA (50S ribosomal protein L28 OS=Prochlorococcus marinus GN=rpmB PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14 Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC +G ++N VS S+ +T K Q NLQ +++WWE GK+++ +R+ST LKTI+K GLD+ AK IDL+K Sbjct: 3 RVCELSGTRANNGMAVSHSHIRTKKLQQANLQKRRLWWEEGKKWLNIRVSTSTLKTIQKKGLDSYAKSQGIDLKK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM4 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpmB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14 Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC +G ++N VS S+ +T K Q NLQ +K+WWE GK+++K+R++T+ LKTI+K GL++ AK IDL K Sbjct: 3 RVCDLSGTRANNGMAVSHSHIRTKKLQQANLQQRKLWWEEGKKWIKVRVTTRTLKTIQKKGLNSYAKAMGIDLSK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM3 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpmB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14 Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TG ++N VS S+ +T K Q NLQ +++WW G R++KLR+ST+ALKTI+K GL AK IDL K Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKKGLGVYAKSLGIDLNK 77
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNSC (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9605) GN=rpmB PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14 Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TG ++N VS S+ +T K Q NLQ +++WW G R+VKLR++T+ALKTI+K GL A AK I+L K Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWVKLRVTTRALKTIQKKGLGAYAKSLGINLAK 77 The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bpback to top |