CX292228

Overview
NameCX292228
Unique NameCX292228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNS3 (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9311) GN=rpmB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  GKR++ LR++T+ALKTI+K GL A A+   I+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWINLRITTRALKTIQKKGLGAYARSLGINLAK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNS9 (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9902) GN=rpmB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R++KLR++T+ALKTI+K GL   AK   I+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWIKLRVTTRALKTIQKKGLGPYAKSLGINLAK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_SYNPX (50S ribosomal protein L28 OS=Synechococcus sp. (strain WH8102) GN=rpmB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  GKR+V LR++T+ALKTI+K GL   AK   I+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQNRRLWWAEGKRWVNLRVTTRALKTIQKKGLGPYAKSLGINLAK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_GLOVI (50S ribosomal protein L28 OS=Gloeobacter violaceus GN=rpmB PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            R C  TGKK+N A  VSFS+ +  + Q  NLQ+K++W +    +V+L+LSTKA+KT+E   L A+AK+A +DL K
Sbjct:    3 RKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLEHRSLHALAKEAGLDLSK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROMT (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WWE   +++ +R++T+ALKTI+K GL   AK   +DL K
Sbjct:    3 RVCQLTGTRANNGMSVSHSHIRTKKLQQANLQQRRLWWEEENKWINIRVTTRALKTIQKKGLGKYAKSLGVDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PROM1 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain NATL1A) GN=rpmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WWE   +++ +R++T+ALKTI+K GL   AK   +DL K
Sbjct:    3 RVCQLTGTRANNGMSVSHSHIRTKKLQQANLQQRRLWWEEENKWINIRVTTRALKTIQKKGLGKYAKSLGVDLNK 77          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_THIDA (50S ribosomal protein L28 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LRLS  AL+TI+KNG+++V    R
Sbjct:    3 RVCVVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRLSNAALRTIDKNGIESVLADLR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_VEREI (50S ribosomal protein L28 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E   R+V+LR+S+ AL+ I+KNG+DAV    R
Sbjct:    3 RVCDVTGKKPMVGNNVSHANNKTRRRFLPNLQYRRFWVETENRWVRLRVSSAALRLIDKNGIDAVLADLR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_NITMU (50S ribosomal protein L28 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGKK    + VS +N+KT +R   NLQ ++ W E+ +R++ LRLS +AL+TI+KNG+DAV  + R
Sbjct:    3 RVCEVTGKKPMTGHHVSHANNKTKRRFLPNLQRRRFWVESERRWISLRLSNEALRTIDKNGIDAVLAEMR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_DIAST (50S ribosomal protein L28 OS=Diaphorobacter sp. (strain TPSY) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V    R
Sbjct:    3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSVLADMR 72          
The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL28_SYNS37.482e-1448.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNS91.667e-1348.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNPX1.667e-1349.3350S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_GLOVI2.843e-1348.0050S ribosomal protein L28 OS=Gloeobacter violaceus... [more]
RL28_PROMT8.272e-1344.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM18.272e-1344.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_THIDA1.843e-1250.0050S ribosomal protein L28 OS=Thiobacillus denitrif... [more]
RL28_VEREI2.407e-1250.0050S ribosomal protein L28 OS=Verminephrobacter eis... [more]
RL28_NITMU4.105e-1248.5750S ribosomal protein L28 OS=Nitrosospira multifor... [more]
RL28_DIAST4.105e-1248.5750S ribosomal protein L28 OS=Diaphorobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC04013A02SK FlavFr1 Citrus clementina cDNA clone C04013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bp
GGGCTGCACGCGAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTTTA
TTGGGAAACACTTCCAATCTACCCTGTCGCCGCCCACGTCTGTCTCCGAA
GTCCATGGTTAAGGTAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTACTT
CACAACTCAGTGGCATCAAAATTTCGTACCGCCTACCTGACGTGGCCACA
CCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCGCG
TAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGTTT
CCTTCTCTAACCACAAGACAACTAAGCGGCAGTTTGTTAACCTACAGTAT
AAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTATGTGAAGCTGCGTTTGTC
AACAAAGGCATTAAAGACGATAGAGAAAAATGGATTGGATGCTGTTGCTA
AGAAGGCTAGAATAGATCTTCGCAAGGAATGATATAGATGGTCTAACTAT
TTTTACCTATAGCTGTTGGTAAAGCTTGTATGCTCACTGTTTCTCTCGAA
ATTTAATTTCATGTTGCACTGTATCTTCTTTTTGCTTGTTCTGTTGAATT
CTTCCCAATTAAATGAGAATACTGATCATTAAAGCAAAAAAAAAAAAAAA
AAAATCGAGGGGGGGCCCGGTCC
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