CX292228

Overview
NameCX292228
Unique NameCX292228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_ACIF2 (50S ribosomal protein L28 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGKK    N VS +++KT +R   NLQY + W E+  R+V++R+STK ++TI+K G+D V    R
Sbjct:    3 RVCKVTGKKPMAGNNVSHAHNKTRRRFLPNLQYHRFWVESENRWVRMRVSTKGIRTIDKKGIDVVLADLR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_BORPE (50S ribosomal protein L28 OS=Bordetella pertussis GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV    R
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_BORPA (50S ribosomal protein L28 OS=Bordetella parapertussis GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV    R
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_BORBR (50S ribosomal protein L28 OS=Bordetella bronchiseptica GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV    R
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_BORA1 (50S ribosomal protein L28 OS=Bordetella avium (strain 197N) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV    R
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XYLFT (50S ribosomal protein L28 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK+    N VS +N+KT +R   NL  ++ W  +  R+VKLR+ST A++TI+KNG+DAV  + R
Sbjct:    3 RVCQVTGKRVQTGNNVSHANNKTRRRFLPNLHKRRFWVASENRWVKLRVSTCAVRTIDKNGIDAVLAELR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XYLFM (50S ribosomal protein L28 OS=Xylella fastidiosa (strain M12) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK+    N VS +N+KT +R   NL  ++ W  +  R+VKLR+ST A++TI+KNG+DAV  + R
Sbjct:    3 RVCQVTGKRVQTGNNVSHANNKTRRRFLPNLHKRRFWVASENRWVKLRVSTCAVRTIDKNGIDAVLAELR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XYLFA (50S ribosomal protein L28 OS=Xylella fastidiosa GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK+    N VS +N+KT +R   NL  ++ W  +  R+VKLR+ST A++TI+KNG+DAV  + R
Sbjct:    3 RVCQVTGKRVQTGNNVSHANNKTRRRFLPNLHKRRFWVASENRWVKLRVSTCAVRTIDKNGIDAVLAELR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XYLF2 (50S ribosomal protein L28 OS=Xylella fastidiosa (strain M23) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK+    N VS +N+KT +R   NL  ++ W  +  R+VKLR+ST A++TI+KNG+DAV  + R
Sbjct:    3 RVCQVTGKRVQTGNNVSHANNKTRRRFLPNLHKRRFWVASENRWVKLRVSTCAVRTIDKNGIDAVLAELR 72
[Close]
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_DECAR (50S ribosomal protein L28 OS=Dechloromonas aromatica (strain RCB) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK     NKVS +N++T +R   NLQY++ W E+  R+++LR+S   L+ I+KNG+DAV    R
Sbjct:    3 RVCQVTGKAPMVGNKVSHANNRTKRRFLPNLQYRRFWVESENRFLRLRVSNAGLRLIDKNGIDAVLADLR 72
The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL28_ACIF22.038e-1145.7150S ribosomal protein L28 OS=Acidithiobacillus fer... [more]
RL28_BORPE2.661e-1147.1450S ribosomal protein L28 OS=Bordetella pertussis ... [more]
RL28_BORPA2.661e-1147.1450S ribosomal protein L28 OS=Bordetella parapertus... [more]
RL28_BORBR2.661e-1147.1450S ribosomal protein L28 OS=Bordetella bronchisep... [more]
RL28_BORA12.661e-1147.1450S ribosomal protein L28 OS=Bordetella avium (str... [more]
RL28_XYLFT3.475e-1147.1450S ribosomal protein L28 OS=Xylella fastidiosa (s... [more]
RL28_XYLFM3.475e-1147.1450S ribosomal protein L28 OS=Xylella fastidiosa (s... [more]
RL28_XYLFA3.475e-1147.1450S ribosomal protein L28 OS=Xylella fastidiosa GN... [more]
RL28_XYLF23.475e-1147.1450S ribosomal protein L28 OS=Xylella fastidiosa (s... [more]
RL28_DECAR3.475e-1145.7150S ribosomal protein L28 OS=Dechloromonas aromati... [more]

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Properties
Property NameValue
Genbank descriptionC04013A02SK FlavFr1 Citrus clementina cDNA clone C04013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bp
GGGCTGCACGCGAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTTTA
TTGGGAAACACTTCCAATCTACCCTGTCGCCGCCCACGTCTGTCTCCGAA
GTCCATGGTTAAGGTAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTACTT
CACAACTCAGTGGCATCAAAATTTCGTACCGCCTACCTGACGTGGCCACA
CCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCGCG
TAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGTTT
CCTTCTCTAACCACAAGACAACTAAGCGGCAGTTTGTTAACCTACAGTAT
AAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTATGTGAAGCTGCGTTTGTC
AACAAAGGCATTAAAGACGATAGAGAAAAATGGATTGGATGCTGTTGCTA
AGAAGGCTAGAATAGATCTTCGCAAGGAATGATATAGATGGTCTAACTAT
TTTTACCTATAGCTGTTGGTAAAGCTTGTATGCTCACTGTTTCTCTCGAA
ATTTAATTTCATGTTGCACTGTATCTTCTTTTTGCTTGTTCTGTTGAATT
CTTCCCAATTAAATGAGAATACTGATCATTAAAGCAAAAAAAAAAAAAAA
AAAATCGAGGGGGGGCCCGGTCC
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