CX292228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANOM (50S ribosomal protein L28 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC +GK+ N VS +N++T +R NL ++ W + R+VKLR+S AL+TI+KNG+DAV K+ R Sbjct: 3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANCP (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC +GK+ N VS +N++T +R NL ++ W + R+VKLR+S AL+TI+KNG+DAV K+ R Sbjct: 3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANCB (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC +GK+ N VS +N++T +R NL ++ W + R+VKLR+S AL+TI+KNG+DAV K+ R Sbjct: 3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANC8 (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC +GK+ N VS +N++T +R NL ++ W + R+VKLR+S AL+TI+KNG+DAV K+ R Sbjct: 3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANC5 (50S ribosomal protein L28 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC +GK+ N VS +N++T +R NL ++ W + R+VKLR+S AL+TI+KNG+DAV K+ R Sbjct: 3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANAC (50S ribosomal protein L28 OS=Xanthomonas axonopodis pv. citri GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC +GK+ N VS +N++T +R NL ++ W + R+VKLR+S AL+TI+KNG+DAV K+ R Sbjct: 3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_BORPD (50S ribosomal protein L28 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpmB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461 RVC TGK N VS +N+KT +R NLQ ++ W E+ R+V+LR+S KA++ I+KNG+DAV R Sbjct: 3 RVCQVTGKGPMTGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSAKAIRIIDKNGIDAVLADLR 72
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PSEPK (50S ribosomal protein L28 OS=Pseudomonas putida (strain KT2440) GN=rpmB PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TGK N +S +N+KT +R NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV +D+RK Sbjct: 3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PSEPG (50S ribosomal protein L28 OS=Pseudomonas putida (strain GB-1) GN=rpmB PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TGK N +S +N+KT +R NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV +D+RK Sbjct: 3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PSEP1 (50S ribosomal protein L28 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpmB PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476 RVC TGK N +S +N+KT +R NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV +D+RK Sbjct: 3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73 The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bpback to top |