CX292228

Overview
NameCX292228
Unique NameCX292228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANOM (50S ribosomal protein L28 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANCP (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANCB (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANC8 (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANC5 (50S ribosomal protein L28 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_XANAC (50S ribosomal protein L28 OS=Xanthomonas axonopodis pv. citri GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_BORPD (50S ribosomal protein L28 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 461
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR+S KA++ I+KNG+DAV    R
Sbjct:    3 RVCQVTGKGPMTGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSAKAIRIIDKNGIDAVLADLR 72          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PSEPK (50S ribosomal protein L28 OS=Pseudomonas putida (strain KT2440) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PSEPG (50S ribosomal protein L28 OS=Pseudomonas putida (strain GB-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of CX292228 vs. ExPASy Swiss-Prot
Match: RL28_PSEP1 (50S ribosomal protein L28 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  252 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 476
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
The following BLAST results are available for this feature:
BLAST of CX292228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL28_XANOM4.539e-1145.7150S ribosomal protein L28 OS=Xanthomonas oryzae pv... [more]
RL28_XANCP4.539e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANCB4.539e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANC84.539e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANC54.539e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANAC4.539e-1145.7150S ribosomal protein L28 OS=Xanthomonas axonopodi... [more]
RL28_BORPD4.539e-1147.1450S ribosomal protein L28 OS=Bordetella petrii (st... [more]
RL28_PSEPK5.928e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_PSEPG5.928e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_PSEP15.928e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionC04013A02SK FlavFr1 Citrus clementina cDNA clone C04013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292228 ID=CX292228; Name=CX292228; organism=Citrus clementina; type=EST; length=673bp
GGGCTGCACGCGAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTTTA
TTGGGAAACACTTCCAATCTACCCTGTCGCCGCCCACGTCTGTCTCCGAA
GTCCATGGTTAAGGTAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTACTT
CACAACTCAGTGGCATCAAAATTTCGTACCGCCTACCTGACGTGGCCACA
CCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCGCG
TAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGTTT
CCTTCTCTAACCACAAGACAACTAAGCGGCAGTTTGTTAACCTACAGTAT
AAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTATGTGAAGCTGCGTTTGTC
AACAAAGGCATTAAAGACGATAGAGAAAAATGGATTGGATGCTGTTGCTA
AGAAGGCTAGAATAGATCTTCGCAAGGAATGATATAGATGGTCTAACTAT
TTTTACCTATAGCTGTTGGTAAAGCTTGTATGCTCACTGTTTCTCTCGAA
ATTTAATTTCATGTTGCACTGTATCTTCTTTTTGCTTGTTCTGTTGAATT
CTTCCCAATTAAATGAGAATACTGATCATTAAAGCAAAAAAAAAAAAAAA
AAAATCGAGGGGGGGCCCGGTCC
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