CX292307

Overview
NameCX292307
Unique NameCX292307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  184 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 444
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+G+  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  157 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 387
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQV 87          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CX292307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_CYACA1.444e-1340.45Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_STAS11.886e-1350.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_FUSCU1.886e-1350.00Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_STAAW2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU2.463e-1348.81Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]

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Properties
Property NameValue
Genbank descriptionC04013H01SK FlavFr1 Citrus clementina cDNA clone C04013H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292307 ID=CX292307; Name=CX292307; organism=Citrus clementina; type=EST; length=719bp
AATTCGGCACGAGGACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGA
ATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAG
AAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAG
GCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGT
TGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTT
TCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTT
GATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCAT
GCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTG
GATCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACT
GCCTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGG
CTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGG
TTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTT
CTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGG
GTAGATCGTTCTTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTCA
TATTTTGTTGAAAAAAAAA
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