CX292307

Overview
NameCX292307
Unique NameCX292307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  160 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 432
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVG+ +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 432
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V G+K ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 444
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVG+  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 444
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVG+  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   97 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 438
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  G+   +L+++I++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
The following BLAST results are available for this feature:
BLAST of CX292307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_STAAB2.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA82.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA32.463e-1348.81Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_ECHGR2.463e-1339.56Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR3.217e-1347.50Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_STAES3.217e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ3.217e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO1_ANASP3.217e-1344.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO3.217e-1344.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
TXND2_MOUSE4.202e-1335.09Thioredoxin domain-containing protein 2 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC04013H01SK FlavFr1 Citrus clementina cDNA clone C04013H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292307 ID=CX292307; Name=CX292307; organism=Citrus clementina; type=EST; length=719bp
AATTCGGCACGAGGACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGA
ATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAG
AAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAG
GCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGT
TGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTT
TCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTT
GATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCAT
GCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTG
GATCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACT
GCCTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGG
CTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGG
TTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTT
CTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGG
GTAGATCGTTCTTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTCA
TATTTTGTTGAAAAAAAAA
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