CX292307

Overview
NameCX292307
Unique NameCX292307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  199 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 444
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  184 TKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 387
            T Q VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 444
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 444
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 444
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  193 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKH 441
            LV++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 444
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  196 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 432
            VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V G+K ++L   I
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 176          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  190 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 441
            ++ VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT +  ++G+ +D++VG+  + L   +AK+
Sbjct:   36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CX292307 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  193 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 444
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
The following BLAST results are available for this feature:
BLAST of CX292307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_STAHJ4.202e-1348.81Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_NEUCR4.202e-1353.52Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIOM_RAT7.167e-1342.86Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE7.167e-1342.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN7.167e-1342.86Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_CHLCV9.361e-1341.67Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIOM_BOVIN9.361e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_PEA2.085e-1243.75Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRX2_SCHPO4.646e-1234.52Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_LISMO4.646e-1239.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC04013H01SK FlavFr1 Citrus clementina cDNA clone C04013H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292307 ID=CX292307; Name=CX292307; organism=Citrus clementina; type=EST; length=719bp
AATTCGGCACGAGGACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGA
ATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAG
AAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAG
GCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGT
TGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTT
TCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTT
GATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCAT
GCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTG
GATCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACT
GCCTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGG
CTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGG
TTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTT
CTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGG
GTAGATCGTTCTTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTCA
TATTTTGTTGAAAAAAAAA
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