CX292308

Overview
NameCX292308
Unique NameCX292308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.207e-77
Identity = 143/193 (74.09%), Postives = 163/193 (84.46%), Query Frame = 1
Query:   79 PPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKN 657
            P    PT D+SE V ISSLALLKMLKHGRAG+P+EVMGLMLGEFVDEYTV+VVDVFAMPQSGT V+VE+VD +FQ  M+ +LK TGR E VVGWYHSHPGFGCWLS VDI+TQQSFE L +RAVAVVVDPIQSVKGKVVIDAFRLI+ Q  +LG EPRQ TSN+G+L  P++ ++IHGLN+HYYS  I  RKN
Sbjct:    8 PDDGEPTSDASETVQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQMEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKN 200          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.205e-71
Identity = 135/213 (63.38%), Postives = 162/213 (76.06%), Query Frame = 1
Query:   28 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML-----GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR 651
            M+RL R              D P  D+SE V ISSLALLKML+H R+G+P+EVMGLMLG+FVD+YT+ V DVFAMPQSGT V+VE+VD V+QT  +D+LK  GR E VVGWYHSHPGFGCWLS VD+NTQQSFEAL+ RAVAVVVDPIQSVKGKV++DAFR +NP  + +       EPRQTTSNLGHL KPS+ +++HGL   YYS+ + YR
Sbjct:    1 MDRLIRSLLMNQNKQATDKLDHP--DTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYR 211          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  112 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQ-TTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKN 657
            + + IS+LALLKM+ H R+G  +EVMGLMLG+ V++ T+ V+D FA+P  GT   V+ +A  + + T  ++  K+ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  VA+VVDP+++V  GKV + AFR          +EP +  T  L  +    +        + YY + I+Y K+
Sbjct:   50 KDIKISALALLKMVMHARSGGTLEVMGLMLGK-VEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTIPLNKIEDFGVHC------KQYYPLEISYFKS 228          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_USTMA (COP9 signalosome complex subunit 5 OS=Ustilago maydis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.353e-28
Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  112 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF-VDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 510
            ++V IS++AL+KM+ H R+G   E+MGLM G+  V+  T+ V+D FA+P  GT   V A +  ++     LD  K+ GR E VVGWYHSHPG+GCWLSG+D+NTQ++ +      VA+V+DP +++  GKV I AFR
Sbjct:   59 QKVRISAVALIKMVMHARSGGIYEIMGLMQGKIDVENRTLYVMDSFALPVEGTETRVNAQNEAYEYMVQYLDHSKEVGRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTISSGKVDIGAFR 195          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.768e-28
Identity = 73/186 (39.25%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  112 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSIAINYRKN 657
            + V IS++ALLKM+ H R+G  +EVMG+++G+ V+  T+ ++D FA+P  GT   V A    ++     L+++KQTGR E  +GWYHSHPG+GCWLSG+D+ TQ   +  ++  + +V+DP ++V  GKV I AFR   PQ     + P +  S    +    I+   +H   + YYS+ I Y K+
Sbjct:   52 KHVKISAIALLKMVMHARSGGKLEVMGMLMGK-VENNTMIIMDSFALPVEGTETRVNAQVEAYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPTRTVSAGKVEIGAFRTY-PQGY---KPPNEGPSEYQSIPLSKIEDFGVH--CKQYYSLEITYFKS 230          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.015e-28
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  124 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 510
            IS+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   57 ISALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 3.015e-28
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  124 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 510
            IS+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   57 ISALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.938e-28
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  124 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 510
            +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   57 VSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.938e-28
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  124 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 510
            +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   55 VSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 185          
BLAST of CX292308 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.143e-28
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  124 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 510
            +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   55 LSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 185          
The following BLAST results are available for this feature:
BLAST of CX292308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RPN11_ENCCU1.207e-7774.0926S proteasome regulatory subunit RPN11 OS=Encepha... [more]
YPT5_CAEEL2.205e-7163.38Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
CSN5_DROME1.107e-3040.32COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_USTMA1.353e-2847.45COP9 signalosome complex subunit 5 OS=Ustilago may... [more]
CSN5_DICDI1.768e-2839.25COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_MOUSE3.015e-2848.48COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_HUMAN3.015e-2848.48COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_XENTR3.938e-2847.73COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_XENLA3.938e-2847.73COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_DANRE5.143e-2847.73COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04013H02SK FlavFr1 Citrus clementina cDNA clone C04013H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292308 ID=CX292308; Name=CX292308; organism=Citrus clementina; type=EST; length=659bp
AATTCGGCACGAGGGAACATGTCAGGTATGGAGCGATTGCAAAGAATGTT
CGCTGGTGCCGGTGGCGCCTTGGGTCACCCGCCACCAGACTCCCCGACTC
TTGATTCATCGGAGCAGGTCTACATCTCCTCACTCGCGCTCCTCAAGATG
CTCAAACACGGTAGAGCTGGTGTGCCCATGGAGGTCATGGGTCTGATGCT
GGGAGAGTTTGTGGACGAGTACACAGTTCGGGTTGTTGATGTGTTTGCTA
TGCCACAAAGTGGAACTGGTGTTAGTGTTGAAGCTGTTGATCATGTGTTC
CAGACTAACATGCTTGACATGCTCAAGCAGACTGGAAGACCAGAAATGGT
TGTTGGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTG
TTGACATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTT
GCTGTGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGA
TGCCTTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCAC
GGCAGACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCA
TTGATCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAG
GAAGAATGA
back to top