CX292382

Overview
NameCX292382
Unique NameCX292382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.457e-29
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG +       L   K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F  WDVGGQ+++R  W  Y++ T  +I V+DS DR R++  ++EL R+L  ++L+ +V+L+
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.457e-29
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG +       L   K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F  WDVGGQ+++R  W  Y++ T  +I V+DS DR R++  ++EL R+L  ++L+ +V+L+
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 5.457e-29
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG +       L   K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F  WDVGGQ+++R  W  Y++ T  +I V+DS DR R++  ++EL R+L  ++L+ +V+L+
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29
Identity = 60/123 (48.78%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG ++S F   LF  ++ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE++ YKN++F+ WD+GGQ  +R  W  YY  T A+I V+DS DR R+ I + EL  +L  ++LQ +V+ +
Sbjct:    1 MGGVMSYFRG-LFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAV 122          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29
Identity = 59/121 (48.76%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  184 ALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            ++  K +  LF  K+ +I++VGLD AGKTT LYKL LGEVVTT PT+G NVE + YKNI+F  WDVGGQ+++R  W  Y++ T  +I V+DS DR R+   ++EL R+L  ++L+ +++L+
Sbjct:    6 SIFGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLV 126          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29
Identity = 60/123 (48.78%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG  +SK    LF  K+ KI+++GLD AGKTT LYKL L ++ T+ PTVG NVE + YKN++F  WDVGGQ+RLR  W  Y+  T A+I VIDS+ R R+   K+EL+ ++G +++++ V+L+
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG L+SK    +F  K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F  WDVGGQ+++R  W  YY GT  +I V+D  DR RI   + EL R++   +++ +++LI
Sbjct:    1 MGKLLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILI 119          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.308e-29
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG  VS  +  +F  K  +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F  WDVGGQ+++R  W  Y++ T  +I V+DS DR R+    +EL ++L  ++L+ +V+L+
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLV 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 9.308e-29
Identity = 61/123 (49.59%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG  +S  +  LF  K  +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F  WDVGGQ+++R  W  Y++ T  +I V+DS DR RI    +EL ++L  ++L+ +V+L+
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLL 123          
BLAST of CX292382 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.216e-28
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  178 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 546
            MG ++SK    +F  K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F  WDVGGQ+++R  W  YY GT  +I V+D  DR RI   + EL R++   +++ +++LI
Sbjct:    1 MGKVLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 119          
The following BLAST results are available for this feature:
BLAST of CX292382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ARF3_MOUSE5.457e-2947.97ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN5.457e-2947.97ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN5.457e-2947.97ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARL1_CAEEL7.127e-2948.78ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF_NEUCR7.127e-2948.76ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF3_YEAST7.127e-2948.78ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARF3_DROME7.127e-2948.78ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF5_CHICK9.308e-2948.78ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_BOVIN9.308e-2949.59ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF6_RAT1.216e-2847.97ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04015A11SK FlavFr1 Citrus clementina cDNA clone C04015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292382 ID=CX292382; Name=CX292382; organism=Citrus clementina; type=EST; length=548bp
GCAATTCGCAAAATCCAGAGGTTTCAATCCCCTGCATCGCAAATCACTCC
CTTCATCATCAGCTCCCATCCATCCACCCCGCCCATTTCATCATCTCCCA
GTCTCTCCATCCAGATTCGATCTCAATTCACTCTCACGTCGATCCTTCAC
GGAATCGGGATTTAAAGAGGGAAAGGTATGGGAGCATTGGTATCGAAGTT
TTGGTTCATGTTGTTTCCTGGAAAGGATTATAAAATTATAATCGTGGGGT
TGGATAATGCTGGCAAAACGACGACGCTTTACAAGTTGCACTTGGGAGAG
GTGGTCACTACTCACCCTACTGTTGGCAGCAACGTTGAGGAGCTTGTTTA
CAAAAACATTCGATTCGAGGCCTGGGATGTTGGCGGACAAGAAAGGCTGC
GGACATCATGGGCAACTTATTATCGTGGAACCCATGCTGTTATTGTGGTT
ATAGACAGTACTGATAGAGCCAGGATTTCCATTATGAAGGACGAACTATT
CAGGCTTCTTGGGCATGAGGACCTACAACACTCTGTTGTACTTATATT
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