CX292386

Overview
NameCX292386
Unique NameCX292386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Mus musculus GN=Uchl1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:   74 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_MACFA (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Macaca fascicularis GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.192e-26
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   ++ F+D S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:   74 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEGTLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL1_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Homo sapiens GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.192e-26
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            E S  VYFMKQT+GN+CGTIGL+HAV N   ++ F+D S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A
Sbjct:   74 EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL_DICDI (Probable ubiquitin carboxyl-terminal hydrolase OS=Dictyostelium discoideum GN=uch1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.499e-24
Identity = 57/145 (39.31%), Postives = 86/145 (59.31%), Query Frame = 2
Query:   83 SKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDT---EATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVI 508
            S  VYFMKQ +GNACGTIG++H+V N  + I+F ++ FF +F   T +L  +ERA  L  + E+E +H ++A  G +   +  + V  HF+ F  VDG LYELDG K   I+HG             V++ MI ++P+ + FN++
Sbjct:   89 SDKVYFMKQYIGNACGTIGVIHSVLNNANVIEFNENGFFKQFLDKTTSLSTEERAISLLKNSEIEKSHEISALQGQSNVPQEDEPVVLHFVSFVHVDGHLYELDGRKPFAINHGESSAETLLKDTANVLQKMIDEDPKEIRFNLM 233          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL_APLCA (Ubiquitin carboxyl-terminal hydrolase OS=Aplysia californica GN=UCH PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.587e-22
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   89 NVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPE 487
            ++Y+ KQT+GNACGT+ ++HA+ N  + I F     F  F + T  L+P+ERA  LE D  M  AH   A  GDT+A    + V  HF+     +G LYELDG K  P+ HG            +V+K  + ++PE
Sbjct:   78 SLYYTKQTIGNACGTVAIVHALANNENVIPFDAAKHFKTFLEKTKPLNPEERAKHLEQDNLMGAAHGDCAQEGDTQAPSQDEHVKSHFVALVHCNGTLYELDGRKEAPVVHGTTSADTFLEDAAEVVKKFMARDPE 213          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UCHL_DROME (Ubiquitin carboxyl-terminal hydrolase OS=Drosophila melanogaster GN=Uch PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.862e-19
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 2
Query:   86 KNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT--DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            +++++M+Q   NACGT+ L+H+V N   E+   D      F + TA+L P+ER   LE D++    H   A  G T A   + V  HFI     +G LYELDG KS PI HG            KV K  + ++P  + F V+A
Sbjct:   80 EDLFYMRQFTHNACGTVALIHSVAN-NKEVDI-DRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQEGQTNAANHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVKDAAKVCKEFMARDPNEVRFTVLA 221          
BLAST of CX292386 vs. ExPASy Swiss-Prot
Match: UBLH1_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 1 OS=Schizosaccharomyces pombe GN=uch1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.878e-15
Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 2
Query:   77 ESSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAA----SAGDTEATDDVNDHFICF----TCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIA 511
            + S  V +  QT+ NACGTIGLLHAV N     K  ++ F     ++      +ERA  +E+ KE+E  H+  A        +E   + + HFICF    +  D   YELDG + GP+ H              VIK  IQ + +S  F+++A
Sbjct:   67 KDSDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHSEIESDLLNAEVLSVIKNYIQ-SIDSPFFSLVA 218          
The following BLAST results are available for this feature:
BLAST of CX292386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UCHL1_MOUSE9.839e-2740.00Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MACFA2.192e-2639.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_HUMAN2.192e-2639.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL_DICDI3.499e-2439.31Probable ubiquitin carboxyl-terminal hydrolase OS=... [more]
UCHL_APLCA5.587e-2238.24Ubiquitin carboxyl-terminal hydrolase OS=Aplysia c... [more]
UCHL_DROME9.862e-1936.11Ubiquitin carboxyl-terminal hydrolase OS=Drosophil... [more]
UBLH1_SCHPO3.878e-1533.33Probable ubiquitin carboxyl-terminal hydrolase 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC04015B04SK FlavFr1 Citrus clementina cDNA clone C04015B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292386 ID=CX292386; Name=CX292386; organism=Citrus clementina; type=EST; length=514bp
GCAGCCGGTGTTGTTGTTCACTTCTATTTGTGGAGCACAACTTCACTCCA
CTTTCCTCATTTTTTTCTCTCTGTAGGAATCTAGCAAGAATGTTTATTTC
ATGAAGCAAACTGTTGGAAATGCTTGTGGAACAATTGGACTTCTTCATGC
TGTTGGGAACGTCACTTCGGAAATCAAGTTTCAAGATGATTCATTCTTCG
ATAAATTTTACAAGTCCACAGCGAACTTGGATCCACAAGAGCGTGCAGCA
TTTCTTGAGAATGATAAGGAAATGGAAGTTGCTCATTCGGTAGCAGCTTC
AGCTGGTGACACAGAGGCTACCGATGACGTGAATGATCATTTTATCTGCT
TCACCTGTGTGGATGGGGAACTTTATGAACTTGATGGAGGGAAGTCGGGG
CCAATATCCCATGGTGCTTCGTCTCCAAGCAGCTTATTGCTGGATGCAGC
TAAAGTGATAAAGGGCATGATCCAGAAAAATCCTGAATCACTGAACTTTA
ATGTAATTGCCTTT
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