CX292407

Overview
NameCX292407
Unique NameCX292407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 276
            +ELK  FRPEFLNR+D++IVF +L+K E+KEI  +M+ ++  RL  +DI +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  691 KELKNSFRPEFLNRVDDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    4 ELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 288
            E+K  F+PEFLNR+D++I+FR L+   +K+I DI L++V +RL+ ++I L+            GY+P YGARPL+R I  +LE  +A+K++A EI
Sbjct:  752 EMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEI 846          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    4 ELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            ELK+YF+PEFLNRLD++I+F  L   ++ EI +IM + + ++LK + I L+            G++P YGARPL+RA+   +ED +AE +L  +I E
Sbjct:  744 ELKRYFKPEFLNRLDDIIIFNPLGLAQIVEIVEIMFEGIREKLKERQITLELTQSAKEQIAEVGFDPVYGARPLKRALYEEVEDRLAELILEDKISE 840          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    4 ELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            +LK YF+PEFLNRLDE I+F+ L K ++K+I  + + +V  RLK K +E++            GYNP YGARP++R I   LE  +A+ +L  + +E
Sbjct:  752 QLKNYFKPEFLNRLDEQIIFKSLKKEDLKKIVKLQIDKVKARLKDKGLEIELNEKVIDWIADKGYNPIYGARPIKRIIQTKLETKLAKMILKSKSEE 848          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 276
            +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++  RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  691 KELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 276
            +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++  RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  691 KELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            E LK  FRPEFLNRLD+ I+FR L K E++ I  + ++ +  RL+ + ++LQ            G++P YGARPL+RAI R LE  +A+ +LA ++ E
Sbjct:  749 EALKAKFRPEFLNRLDDQIIFRSLEKEELRRIVSLQVERLRSRLEQRKLDLQLSDIAADWLATIGFDPVYGARPLKRAIQRELETPIAKAILAGQLSE 846          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    7 LKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            L+Q+FRPEFLNRLDE++VFR L + ++  I  I L+ V  RL  + I L+            GY+P +GARPL+R I R LE  ++ K+LA E+ +
Sbjct:  736 LQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEVAD 831          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15
Identity = 38/91 (41.76%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    7 LKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 279
            L  YFRPEFLNR+DE+++F++LT+  ++ I DI L+ V +RL+++ I+L+            GY+ ++GARPL+RAI   LE+++A ++L+
Sbjct:  763 LHTYFRPEFLNRIDEVLIFKRLTRKHIRLITDIQLQMVVERLESRHIKLRVRDAAKAYLAERGYDDTFGARPLKRAIQTELENALAREILS 853          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            EELKQ F PEFLNR+D++IVF  L+K ++K+I +IMLKE+ + +K ++I +             G++  YGAR LRRAI + +ED ++ ++L   I++
Sbjct:  700 EELKQNFNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKELNEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIED 797          
The following BLAST results are available for this feature:
BLAST of CX292407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
CLPC_STAHJ1.326e-1645.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_CLOPE1.326e-1644.21Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_WOLSU1.732e-1642.27Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_PROMA1.732e-1642.27Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPC_STAES2.262e-1645.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ2.262e-1645.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB1_SYNPX2.954e-1642.86Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_MEIRU8.595e-1643.75Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_TREPA1.122e-1541.76Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
HLYB_TREHY1.466e-1541.84Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]

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Properties
Property NameValue
Genbank descriptionC04015D05SK FlavFr1 Citrus clementina cDNA clone C04015D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292407 ID=CX292407; Name=CX292407; organism=Citrus clementina; type=EST; length=482bp
GAGGAATTGAAGCAGTACTTCAGGCCGGAGTTCTTGAATAGATTGGATGA
GATGATTGTTTTCCGACAACTCACCAAGCTGGAGGTTAAAGAGATTGCTG
ATATAATGCTGAAGGAGGTGTTTGATAGACTCAAGACAAAAGATATTGAG
CTTCAAGTGACAGAGAGATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAA
CCCAAGCTATGGAGCAAGGCCATTGAGAAGAGCCATTATGAGACTTTTGG
AAGACAGCATGGCTGAGAAGATGCTTGCAAGAGAGATCAAAGAGGGTGAT
TCGGTCATTGTTGATGTCGATTCTGATGGGAACGTGACTGTGCTCAACGG
CAGCAGCGGTGCTCCAGAATCATTGGCAGATCCACTACCTGTTGTGTAAA
CTGATCATCTATTTTGAGATGTTTGTTGTACTTCCATTTTGATTTCAACT
GGCTAGATACTCAGTCTGGTTTCTTGGAAGGA
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