CX292414

Overview
NameCX292414
Unique NameCX292414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAI (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lpdA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28
Identity = 71/202 (35.15%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +V +++     +P +D +I   +++S+ +Q    ML T +  V++  D + + +      +K IL  D VLV+ GRTP    LGLD+IG++ +  G I VN +  TN+P +YAIGDV   PMLAHK   +G    E ++GK+ + +   +P + YT PE+A VG +E++ K+  + Y V  FP+ A+ RA A + + G  K+
Sbjct:  200 KVDIIDRFNHFLPVIDEDISSIYKKSINQQ-FNLMLNTHIDKVEVKKDALIVDMIHENIPKKNILY-DAVLVAIGRTPNIDSLGLDRIGLKINNFGFIQVNNQLKTNIPHIYAIGDVAGTPMLAHKGVHEGHIAAEVISGKNHYFEPKVIPSIAYTDPEIAWVGLSEKEAKQENINYEVAIFPWNASGRAIASNCSIGKTKL 399          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 82/213 (38.50%), Postives = 112/213 (52.58%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT-----NVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKI 607
            EVT++E   D++P  D EI K  +R L K +      T V    + +G  V++ L  A   E    LE D  LV+ GR P T  LGL+ +GVETD+ G I VN++         VP ++A+GD     MLAH A   GV  VE + G+   VDY  +P   +THPE++ VG TE Q KELG +        K  F  NS+A A  + +GI K+
Sbjct:  202 EVTMIEALPDLMPGFDPEIAKIAERVLIKSR-DIETYTGVFATKIKAGSPVEIELTDAKTKEVIDTLEVDACLVATGRIPATKNLGLETVGVETDRRGFIEVNDQMQVIKDGKPVPHLWAVGDATGKMMLAHAASGQGVVAVENICGRKTEVDYRAIPAAAFTHPEISYVGLTEAQAKELGEKEGFVVSTAKTYFKGNSKALAEKETDGIAKV 413          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH3_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=acoL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.918e-28
Identity = 72/202 (35.64%), Postives = 111/202 (54.95%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +VT++E A  ++P+ D +I + FQ  LE+  ++    +++  VD +      T    +G  +   +AD VLV+ GR P   GL L++ GV+    G IPVN    TNVP +YA GD I G  LAH A  +G+      +G+   ++   VP  +YT PE+A +G TE Q + +  + ++G+F F AN +A     AEG VKI
Sbjct:  195 QVTIIETADRLIPAEDEDIARLFQEKLEEDGVEVHTSSRLGRVDQTAK----TAIWKSGQREFKTKADYVLVAIGRKPRLDGLQLEQAGVDFSPKG-IPVNGHMQTNVPHIYACGDAIGGIQLAHAAFHEGIIAASHASGRDVKINEKHVPRCIYTSPEIACIGMTERQARSIYGDVKIGEFSFSANGKALIKQQAEGKVKI 391          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.295e-27
Identity = 77/203 (37.93%), Postives = 109/203 (53.69%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +VT+VE    ++P+ + E+ +  +RS EK  +      K+  V +S  GV   L       +T L A  +LV+ G T    GLGLD +GVET++ G I  + +  T+ PG+YAIGDV  G +LAHKA  +    VE +AGK    +    +P  VY  P VASVG TEE     G +  VG+  F A+ +A A    EG VK+
Sbjct:  204 KVTIVELMPRMLPAEEAEVSEALKRSFEKAGITVHCGAKLDNVAVSESGVSAELVVEGSAPQT-LNASCLLVAVGVTGAIDGLGLDAVGVETER-GFIRTDGQCRTSAPGIYAIGDVRGGMLLAHKASAEAAIAVEAIAGKSPEPLSEPLIPRCVYAQPSVASVGLTEEAAVNAGYQVAVGRSQFAASGKANAYGQLEGFVKL 404          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.295e-27
Identity = 68/202 (33.66%), Postives = 116/202 (57.43%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +V +V+     +PS+D +I   + +S++K + K +L T V  V+ S D   +        ++ +   D +LV+ GR+P    LGL+KIG++ ++ G I +N++  TN+  +YAIGDV   PMLAHKA +      E ++GK  + +   +P V YT PE+A VG +E++ +   ++Y V  FP+ A+ RA A +   G+ K+
Sbjct:  200 KVDIVDRFNAFLPSVDKDITDIYIKSIKK-RFKLLLNTHVKSVEKSKDNDLIVKIAEENSDENVCCYDNILVAIGRSPNVDFLGLEKIGLKLNESGFIEINQQLKTNISHIYAIGDVTGFPMLAHKAVQQAHIAAEVISGKKHYFEPKVIPSVAYTDPEIAWVGLSEKEAENNDIDYEVSLFPWSASGRAHASNCTLGMTKL 400          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.692e-27
Identity = 68/201 (33.83%), Postives = 111/201 (55.22%), Query Frame = 2
Query:    5 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            V +++ + DI+P +D ++   F+RS+      F   + V+ +    +G+ + +       K     D++LV+ GR P T  L + K+G++TD  G I VNE+F TN+P +YAIGDVI  PMLAHK   +G    E ++GK  + +   +P V YT PE+A VG TE + ++  + Y V    +    RA +   +EG+ K+
Sbjct:  202 VDIIDNSHDILPHLDRDVIDIFKRSVNHDYNIFF-NSNVIKIVQEKNGLLVHIAENDNKNKRFELYDIILVAIGRVPNTDMLDISKVGLKTDNNGFIKVNEQFCTNIPNIYAIGDVIGQPMLAHKGTHEGHIVAEVISGKKHYFNPFVIPCVSYTEPEIAWVGITENEARKNNINYEVSSVLWNTLGRAVSSQCSEGVTKL 401          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 72/203 (35.47%), Postives = 112/203 (55.17%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG-KHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 604
            EV++VE A  I+P  D E+     ++ +K+ ++ + ++ +  +    +GV   +   A G+ T       +V+ G       +GLDK+G++ D+ G I V+    TNV  V+AIGDV   P LAHKA   GV   E +AG  H H ++   +PG  Y  P+VASVG TEE+ ++ G   ++G FPF+AN +A A    +G VK
Sbjct:  198 EVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPDDEGVTAEIA-GADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDR-GFIAVDGFGRTNVDHVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVGLTEEKARQQGYNVKIGNFPFIANGKAIAQGATDGFVK 398          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 78/203 (38.42%), Postives = 109/203 (53.69%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +VT+VE    ++P+ + E+ +  +RS EK  +      K+  V +S  GV   L  A G E   +EA  +LV+ G T    GLGLD  G+ET++ G I  +E   T+  G+YAIGDV  G +LAHKA  +    VE +AGK    +    +P  VY  P VASVG TEE     G +  VG+  F A+ +A A    EG VK+
Sbjct:  204 KVTIVELMPRLLPAEEAEVSEALKRSFEKVDITVQCGAKLGNVAISEFGVNADLL-AEGKEPQKIEASCMLVAVGVTGVIDGLGLDAAGIETER-GFIRTDELCRTSASGIYAIGDVRGGMLLAHKASAEAAIAVEAIAGKLPEPLSEPLIPRCVYAQPSVASVGLTEEAAIAAGYKVLVGRSQFAASGKANAYGQLEGFVKL 404          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 72/205 (35.12%), Postives = 104/205 (50.73%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +V+V+E     +PS + +I    ++  E+  + F           S     LT  PA   A      L AD +LV+ GR P T  L +D  GVET+  G IP +    TN   ++A+GDV   PMLAHK  ++G    E +AG+   VDY  +P  V+T PE+ +VG TE +    G+    G+F F A+ RA   + AEG V+I
Sbjct:  204 DVSVIEMLEQALPSYEEDIASIVRKRAERLGVDFHFGYTADSWAASDGKAVLTAVPADEAAHDSDIELTADRILVAVGRRPVTDTLSIDDAGVETNAQGFIPTDSTCRTNKEHIFAVGDVAGEPMLAHKGSKEGEVAAEVIAGEPAAVDYQALPAAVFTDPEIGTVGLTENEAANKGMTPVTGEFQFQASGRALTANRAEGFVRI 408          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH2_HALMA (Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marismortui GN=lpdA2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 67/204 (32.84%), Postives = 109/204 (53.43%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE--ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            EVTVVE   D++P  + +I    +   E+  + F         + + +G+++        ++ + E  A+  LV+ GR P T  L LD I ++TD+ G IP +++  T    V+A+GDV   PMLAHKA  +G       AG+    D+  +P  V+T PE+A+VG TE + +  G E  +G+ P  AN RA  +++ EG V++
Sbjct:  204 EVTVVEMLDDVLPGYEDDIATVVRDRAEELGIDFNFGEAADNWEETDEGIRVQ---TVDEDEVVTEYNAEKCLVAVGREPVTDTLALDNIDLQTDENGVIPTDDQCRTAFESVFAVGDVAGEPMLAHKAMAEGEVAARAAAGEPAAFDHQAIPAAVFTDPEIATVGMTESEAEAAGFEPVIGQMPVRANGRALTVNEKEGFVRV 404          
The following BLAST results are available for this feature:
BLAST of CX292414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
DLDH_BUCAI1.530e-2835.15Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_SYNY33.409e-2838.50Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
DLDH3_BACSU9.918e-2835.64Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_CHLTE1.295e-2737.93Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_BUCAP1.295e-2733.66Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_BUCBP1.692e-2733.83Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_ZYMMO6.429e-2735.47Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]
DLDH_CHLP86.429e-2738.42Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH3_HALMA6.429e-2735.12Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]
DLDH2_HALMA1.432e-2632.84Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marism... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04015D12SK FlavFr1 Citrus clementina cDNA clone C04015D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292414 ID=CX292414; Name=CX292414; organism=Citrus clementina; type=EST; length=608bp
AGAGGTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATG
GGGAAATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAA
TTCATGCTCAAAACTAAGGTGGTGGGAGTTGATTTATCTGGTGATGGTGT
CAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAGAAGACCATACTTGAAG
CTGATGTTGTTCTTGTGTCTGCTGGCCGGACTCCATTCACCGCTGGGCTC
GGGCTGGATAAGATAGGAGTGGAAACCGATAAGATGGGACGGATACCAGT
TAATGAGAGATTTGCTACAAACGTACCTGGTGTTTATGCGATTGGAGACG
TAATTCCAGGACCAATGTTAGCTCACAAGGCAGAAGAGGATGGGGTTGCT
TGTGTTGAATTCTTAGCTGGTAAACATGGCCATGTGGACTATGATAAGGT
CCCTGGAGTTGTCTACACACACCCTGAGGTTGCTTCAGTTGGGAAGACTG
AGGAGCAGGTAAAGGAACTTGGTGTTGAGTACCGTGTGGGGAAATTCCCT
TTCTTGGCAAATAGCCGAGCAAAAGCTATTGATGATGCTGAAGGAATAGT
CAAGATTT
back to top