CX292414

Overview
NameCX292414
Unique NameCX292414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 73/204 (35.78%), Postives = 105/204 (51.47%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +VT+VEF    +P+ D ++ K+ ++  +K  +  +  TKV  +   G  V +T+     G    L+A+ VL + G  P   G GLDK GV       I V++   TNV  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G +  V KFPF AN++A  + D  G VK+
Sbjct:  196 DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTV--TKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKL 397          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 73/204 (35.78%), Postives = 105/204 (51.47%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +VT+VEF    +P+ D ++ K+ ++  +K  +  +  TKV  +   G  V +T+     G    L+A+ VL + G  P   G GLDK GV       I V++   TNV  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G +  V KFPF AN++A  + D  G VK+
Sbjct:  196 DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTV--TKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKL 397          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 74/206 (35.92%), Postives = 109/206 (52.91%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD----LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            +V+VVE    I+P+ D E+      SL+K  +   L   V G +    L+ DG          G +  LEAD VLV+ GR P T G  L+ + ++ +    I ++ER  T++  V+AIGDV   PMLAH+A   G    E +AGK    +   +  V +T PEV  VGKT EQ  + G++  V +FPF AN RA +++   G V++
Sbjct:  197 QVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGK---------GGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAA-IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRV 392          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 71/203 (34.98%), Postives = 109/203 (53.69%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR-IPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            EV VVE    I+P  D E+ K   ++L +  ++  L   ++G   +G  V+        GE+  + AD VLV+ GR P + G  L+ +G+  D  GR + V+++  T++  V+AIGD+   PMLAH+A   G    E +AGK        +P V +T PEV   G + EQ K+ G++  V  FPF AN RA  ++  EG V++
Sbjct:  202 EVAVVEAQPRILPGYDEELTKPVAQALRRLGVELYLGHSLLGPSENGVRVR-----DGAGEEREIAADQVLVAVGRKPRSEGWNLESLGL--DMNGRAVKVDDQCRTSMRNVWAIGDLAGEPMLAHRAMAQGEMVAELIAGKRRQFAPVAIPAVCFTDPEVVVAGLSPEQAKDAGLDCLVASFPFAANGRAMTLEANEGFVRV 397          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: MERA_BACCE (Mercuric reductase OS=Bacillus cereus GN=merA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24
Identity = 65/203 (32.02%), Postives = 105/203 (51.72%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAH-KAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            EVT+++ +  ++   D EI +   ++L +Q +  +       V+  GD  K+ +E    G+K I+EA+ +L++ GR P    L L   GVE    G I +++   T    +Y+ GDV PGP   +  A E G+A    + G +  V+ + VPGV +T P +A+VG TE+Q KE G E +    P  A  RA    +  G+ K+
Sbjct:  359 EVTLIQRSERLLKEYDPEISEAITKALTEQGINLVTGATYERVEQDGDIKKVHVE--INGKKRIIEAEQLLIATGRKPIQTSLNLHAAGVEVGSRGEIVIDDYLKTTNSRIYSAGDVTPGPQFVYVAAYEGGLAARNAIGGLNQKVNLEVVPGVTFTSPSIATVGLTEQQAKEKGYEVKTSVLPLDAVPRALVNRETTGVFKL 559          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 66/203 (32.51%), Postives = 103/203 (50.74%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAH-KAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            EVT+++ +  +  + D EI +    SL +Q +  +       V+ +G    + +E    G++ ++EAD VLV+ GR P T  L L+  GV+T K G +  NE   T+   +YA GDV  GP   +  A E G+     L      +D   VPGV +T+P +A+VG TE+Q KE G + +    P  A  RA    +  G+ K+
Sbjct:  275 EVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIE--VNGQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKL 475          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 66/203 (32.51%), Postives = 103/203 (50.74%), Query Frame = 2
Query:    2 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAH-KAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            EVT+++ +  +  + D EI +    SL +Q +  +       V+ +G    + +E    G++ ++EAD VLV+ GR P T  L L+  GV+T K G +  NE   T+   +YA GDV  GP   +  A E G+     L      +D   VPGV +T+P +A+VG TE+Q KE G + +    P  A  RA    +  G+ K+
Sbjct:  275 EVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIE--VNGQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKL 475          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: STHA_KLEP7 (Soluble pyridine nucleotide transhydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 64/165 (38.79%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  116 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            K+ GVD   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG++TD  G++ VN  + T +P +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +  + G +KI
Sbjct:  242 KIEGVD---DGVIMHLK---SGKK--LKADCLLYANGRTGNTDTLALENIGLQTDSRGQLKVNSMYQTALPHIYAVGDVIGYPSLASAAYDQGRIAAQALVKGEASAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMSVGTLKI 398          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: STHA_KLEP3 (Soluble pyridine nucleotide transhydrogenase OS=Klebsiella pneumoniae (strain 342) GN=sthA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 64/165 (38.79%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  116 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            K+ GVD   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG++TD  G++ VN  + T +P +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +  + G +KI
Sbjct:  242 KIEGVD---DGVIMHLK---SGKK--LKADCLLYANGRTGNTDTLALENIGLQTDSRGQLKVNSMYQTALPHIYAVGDVIGYPSLASAAYDQGRIAAQALVKGEASAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMSVGTLKI 398          
BLAST of CX292414 vs. ExPASy Swiss-Prot
Match: STHA_SALTY (Soluble pyridine nucleotide transhydrogenase OS=Salmonella typhimurium GN=sthA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  116 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNVPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 607
            K+ G D   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KI
Sbjct:  242 KIEGCD---DGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKI 398          
The following BLAST results are available for this feature:
BLAST of CX292414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
DLDH_MYCTU1.871e-2635.78Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO1.871e-2635.78Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH1_PSEPU4.607e-2535.92Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH1_PSEAE4.607e-2534.98Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
MERA_BACCE6.653e-2432.02Mercuric reductase OS=Bacillus cereus GN=merA PE=1... [more]
MERA_STAES1.936e-2332.51Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU1.936e-2332.51Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]
STHA_KLEP73.090e-2138.79Soluble pyridine nucleotide transhydrogenase OS=Kl... [more]
STHA_KLEP33.090e-2138.79Soluble pyridine nucleotide transhydrogenase OS=Kl... [more]
STHA_SALTY8.992e-2139.39Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionC04015D12SK FlavFr1 Citrus clementina cDNA clone C04015D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292414 ID=CX292414; Name=CX292414; organism=Citrus clementina; type=EST; length=608bp
AGAGGTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATG
GGGAAATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAA
TTCATGCTCAAAACTAAGGTGGTGGGAGTTGATTTATCTGGTGATGGTGT
CAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAGAAGACCATACTTGAAG
CTGATGTTGTTCTTGTGTCTGCTGGCCGGACTCCATTCACCGCTGGGCTC
GGGCTGGATAAGATAGGAGTGGAAACCGATAAGATGGGACGGATACCAGT
TAATGAGAGATTTGCTACAAACGTACCTGGTGTTTATGCGATTGGAGACG
TAATTCCAGGACCAATGTTAGCTCACAAGGCAGAAGAGGATGGGGTTGCT
TGTGTTGAATTCTTAGCTGGTAAACATGGCCATGTGGACTATGATAAGGT
CCCTGGAGTTGTCTACACACACCCTGAGGTTGCTTCAGTTGGGAAGACTG
AGGAGCAGGTAAAGGAACTTGGTGTTGAGTACCGTGTGGGGAAATTCCCT
TTCTTGGCAAATAGCCGAGCAAAAGCTATTGATGATGCTGAAGGAATAGT
CAAGATTT
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