CX292415

Overview
NameCX292415
Unique NameCX292415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_BURCC (Xylose isomerase OS=Burkholderia cenocepacia (strain MC0-3) GN=xylA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 96/165 (58.18%), Postives = 118/165 (71.52%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ TH LGGENYV WGGREGY++LLNTD+ RE D  A F      +K +IGFKG LLIEPKPQEPTKHQYD+D AT   FL +YGL N+ ++NIE NHATL+GHS HH+I  A   G+ G++DAN GDPQ GWDTDQF   + E T     ++++GG   GG NF
Sbjct:  173 LDATHRLGGENYVLWGGREGYETLLNTDLKRERDQFARFLSMVVEHKHRIGFKGALLIEPKPQEPTKHQYDYDVATVHGFLVQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNF 337
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_BURCA (Xylose isomerase OS=Burkholderia cenocepacia (strain AU 1054) GN=xylA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 96/165 (58.18%), Postives = 118/165 (71.52%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ TH LGGENYV WGGREGY++LLNTD+ RE D  A F      +K +IGFKG LLIEPKPQEPTKHQYD+D AT   FL +YGL N+ ++NIE NHATL+GHS HH+I  A   G+ G++DAN GDPQ GWDTDQF   + E T     ++++GG   GG NF
Sbjct:  173 LDATHRLGGENYVLWGGREGYETLLNTDLKRERDQFARFLSMVVEHKHRIGFKGALLIEPKPQEPTKHQYDYDVATVHGFLVQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNF 337
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_BURA4 (Xylose isomerase OS=Burkholderia ambifaria (strain MC40-6) GN=xylA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.379e-54
Identity = 96/165 (58.18%), Postives = 118/165 (71.52%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ TH LGGENYV WGGREGY++LLNTD+ RE D  A F      +K +IGFKG LLIEPKPQEPTKHQYD+D AT   FL +YGL N+ ++NIE NHATL+GHS HH+I  A   G+ G++DAN GDPQ GWDTDQF   + E T     ++++GG   GG NF
Sbjct:  173 LDATHRLGGENYVLWGGREGYETLLNTDLKRERDQFARFLSMVVEHKHRIGFKGALLIEPKPQEPTKHQYDYDVATVHGFLVQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNF 337
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_PHOLL (Xylose isomerase OS=Photorhabdus luminescens subsp. laumondii GN=xylA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 96/165 (58.18%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            M++T  LGGENYV WGGREGY+SLLNTD+ +E + +  F +    YK KIGF+G LLIEPKPQEPTKHQYD+D AT   FL+++GL N+ K+NIE NHATL+GHS  H++ TA   G+LG+IDAN GD Q+GWDTDQF   + E + +M  ++K GG   GG NF
Sbjct:  174 MQMTKKLGGENYVLWGGREGYESLLNTDLRQEREQIGRFMQMVVDYKYKIGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLENEIKVNIEANHATLAGHSFQHEVATAIALGILGSIDANRGDAQLGWDTDQFPNSVEENSLVMYEILKAGGFTTGGLNF 338
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_PECCP (Xylose isomerase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=xylA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 95/165 (57.58%), Postives = 120/165 (72.73%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            M  T  LGGENYV WGGREGY++LLNTD+ +E + +  F +    +K KIGF+G LLIEPKPQEPTKHQYD+D AT   FL+++GL  + K+N+E NHATL+GHS HH+I TA   G+ G++DAN GDPQ+GWDTDQF   + E T IM  ++K GG   GG NF
Sbjct:  174 MNATKKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNVEANHATLAGHSFHHEIATAVALGVFGSVDANRGDPQLGWDTDQFPNSVEENTLIMYEILKAGGFTTGGLNF 338
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_ERWCT (Xylose isomerase OS=Erwinia carotovora subsp. atroseptica GN=xylA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 95/165 (57.58%), Postives = 120/165 (72.73%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            M  T  LGGENYV WGGREGY++LLNTD+ +E + +  F +    +K KIGF+G LLIEPKPQEPTKHQYD+D AT   FL+++GL  + K+N+E NHATL+GHS HH+I TA   G+ G++DAN GDPQ+GWDTDQF   + E T IM  ++K GG   GG NF
Sbjct:  174 MNATKTLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNVEANHATLAGHSFHHEIATAVALGVFGSVDANRGDPQLGWDTDQFPNSVEENTLIMYEILKAGGFTTGGLNF 338
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_CLOTS (Xylose isomerase OS=Clostridium thermosaccharolyticum GN=xylA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 100/165 (60.61%), Postives = 119/165 (72.12%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +E+T  LGG+NYVFWGGREGY++LLNTDM  E+D+ A F   A  Y K+IGF+G  LIEPKP+EPTKHQYD+D A    FLRKY L    K+NIE NHATL+ H   H++  AR+NG+LG+IDANTGD  +GWDTDQF TDI   T  M  VIK GG   GG NF
Sbjct:  174 LEITKELGGQNYVFWGGREGYETLLNTDMELELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPTKHQYDFDVANVLAFLRKYDLDKYLKVNIEANHATLAAHDFQHELRYARINGVLGSIDANTGDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNF 338
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_BACSU (Xylose isomerase OS=Bacillus subtilis GN=xylA PE=3 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 95/165 (57.58%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +E    LG ENYVFWGGREGY++LLNTD+  E+D++A F   A  Y K+IG+ G  LIEPKP+EPT HQYD DAAT   FL++YGL N FKLN+E NHATL+GH+  H++  AR++GLLG++DAN G P +GWDTD+F TD+   T  M  +++NGGL  GG NF
Sbjct:  180 LETAKELGAENYVFWGGREGYETLLNTDLKFELDNLARFMHMAVDYAKEIGYTGQFLIEPKPKEPTTHQYDTDAATTIAFLKQYGLDNHFKLNLEANHATLAGHTFEHELRMARVHGLLGSVDANQGHPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGSGGLNF 344
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_THESQ (Xylose isomerase OS=Thermotoga sp. (strain RQ2) GN=xylA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.353e-54
Identity = 99/165 (60.00%), Postives = 121/165 (73.33%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +E+T  LGGE YVFWGGREGY++LLNTD+G E++++A F   A  Y KKIGF G  LIEPKP+EPTKHQYD+D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T+I + T  M  VIK GG   GG NF
Sbjct:  174 LEITKELGGEGYVFWGGREGYETLLNTDLGLELENLARFLRMAVEYAKKIGFTGQFLIEPKPKEPTKHQYDFDVATAYAFLKNHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNIYDTTLAMYEVIKAGGFTKGGLNF 338
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_THEP1 (Xylose isomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=xylA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.353e-54
Identity = 99/165 (60.00%), Postives = 121/165 (73.33%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +E+T  LGGE YVFWGGREGY++LLNTD+G E++++A F   A  Y KKIGF G  LIEPKP+EPTKHQYD+D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T+I + T  M  VIK GG   GG NF
Sbjct:  174 LEITKELGGEGYVFWGGREGYETLLNTDLGLELENLARFLRMAVEYAKKIGFTGQFLIEPKPKEPTKHQYDFDVATAYAFLKNHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNIYDTTLAMYEVIKAGGFTKGGLNF 338
The following BLAST results are available for this feature:
BLAST of CX292415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
XYLA_BURCC1.379e-5458.18Xylose isomerase OS=Burkholderia cenocepacia (stra... [more]
XYLA_BURCA1.379e-5458.18Xylose isomerase OS=Burkholderia cenocepacia (stra... [more]
XYLA_BURA41.379e-5458.18Xylose isomerase OS=Burkholderia ambifaria (strain... [more]
XYLA_PHOLL1.802e-5458.18Xylose isomerase OS=Photorhabdus luminescens subsp... [more]
XYLA_PECCP1.802e-5457.58Xylose isomerase OS=Pectobacterium carotovorum sub... [more]
XYLA_ERWCT1.802e-5457.58Xylose isomerase OS=Erwinia carotovora subsp. atro... [more]
XYLA_CLOTS1.802e-5460.61Xylose isomerase OS=Clostridium thermosaccharolyti... [more]
XYLA_BACSU1.802e-5457.58Xylose isomerase OS=Bacillus subtilis GN=xylA PE=3... [more]
XYLA_THESQ2.353e-5460.00Xylose isomerase OS=Thermotoga sp. (strain RQ2) GN... [more]
XYLA_THEP12.353e-5460.00Xylose isomerase OS=Thermotoga petrophila (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC04015E01SK FlavFr1 Citrus clementina cDNA clone C04015E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292415 ID=CX292415; Name=CX292415; organism=Citrus clementina; type=EST; length=564bp
GCATGGTGCTGCAACTAGCTCTGAAGTGGCTGTATATGCTTATGCTGCTG
CTCAAGTCAAGAAAGCCATGGAGGTCACTCATTATTTAGGGGGAGAAAAT
TATGTATTTTGGGGTGGCCGTGAAGGTTATCAGTCTCTCCTGAACACAGA
CATGGGAAGAGAGATTGATCACATGGCAAATTTTTTTGAATCTGCTGCCG
CGTACAAGAAGAAGATTGGATTCAAAGGGAATCTGTTGATCGAACCAAAG
CCTCAAGAACCTACCAAACACCAGTATGACTGGGATGCAGCAACAGCAGC
TAATTTCTTGCGGAAATATGGCCTCATAAATGACTTTAAACTAAACATTG
AGTGTAACCATGCCACCCTATCTGGTCACAGCTGCCATCATGATATTGAA
ACTGCAAGACTCAATGGTCTGCTAGGAAACATCGATGCAAACACTGGTGA
CCCTCAAGTTGGTTGGGATACAGATCAATTCCTGACAGATATTGGAGAGG
CTACTTCGATTATGCTCAGTGTGATTAAAAATGGAGGTTTGGCACCTGGA
GGATTCAACTTTGA
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