CX292416

Overview
NameCX292416
Unique NameCX292416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.225e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC +YP SD VI++HKE++L
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.225e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 2
Query:   74 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            Y + L  P GE+ + E   D YILDAAEEAGVDLPYSCRAG+CS+CAGK+ SG+VDQSD SFLDD+QM++G++LTC++Y TSDC I +H+EE L
Sbjct:    2 YMVTLKTPSGEQ-KVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.600e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YK+KLI P G    F+  +++YILDAAEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLITPDGPV-VFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.600e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YK+KL+ P+G + EFE  +D YILD AEE G+ LPYSCRAG+CS+CAGK+ +G V+QSDGSFLDD+Q+E G++LTC++Y  SD  I++HKEEEL
Sbjct:    1 ASYKVKLVTPEGTQ-EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.600e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.089e-30
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 2
Query:   68 AVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YKI L+  + G +  F+  ED YILDAAEE G++LPYSCRAGACSTCAGK+  G+VDQSD SFLDD QM  GY+LTCI+YP SDC I +H E+EL
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 2
Query:   65 MAVYKIKLIGPKGEEHEF----EAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            MA YK+ LI    EEH+     +  +D ++LDAAEEAG+DLPYSCRAGACSTCAGK+  G++DQS+ +FLDD+QM AG++LTCI+YP SDC I  H+E+EL
Sbjct:    1 MATYKVTLIS---EEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPI-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDL 95          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CX292416 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 56/96 (58.33%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   68 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 355
            A YK+ L+ P G +   +  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+ +G+VDQ D SFLDD+Q+EAG++LTC++YP  D  I++HKEE++
Sbjct:    1 ATYKVTLVTPSGTQ-TIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDI 95          
The following BLAST results are available for this feature:
BLAST of CX292416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_ORYSI1.225e-3063.54Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_DUNSA1.225e-3064.89Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_PHYAF1.600e-3062.50Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER_MEDSA1.600e-3062.50Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_ATRBE1.600e-3062.50Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER_PORUM2.089e-3064.95Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_THAWE2.729e-3060.40Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER_SOLNI2.729e-3061.46Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER2_HYONI3.564e-3061.46Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_PHYES3.564e-3058.33Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04015E02SK FlavFr1 Citrus clementina cDNA clone C04015E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292416 ID=CX292416; Name=CX292416; organism=Citrus clementina; type=EST; length=435bp
TGGATCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCA
ATTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAG
GGTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGC
AGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTT
GCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGAT
GGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTG
CATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAG
AGCTTTGCTGAGTGCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTAT
GAACTGTGATCAAGTGCCTGATTATGCTGATAAGG
back to top