CX292422

Overview
NameCX292422
Unique NameCX292422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length209
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.228e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLN 200
            FRL+R+QG  ++CDVF  +KD  G FK SL NDV+G+L L+EA  M V GE IL++A+ FT + L+
Sbjct:  107 FRLMRKQGYYVTCDVFNNYKDKNGAFKQSLANDVEGLLELYEATSMRVPGEIILEDALGFTRSRLS 172          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.228e-14
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNS 203
            FRLLRQ G  IS ++F KF+D+ G+FK SL +DV G+L+L+EA+++    + IL++A+AF+T HL S
Sbjct:  111 FRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.168e-12
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLRQ G  +S +VF  FKDD+G F   + +D +G+LSLHEA+Y ++ GE I++EA  FT+ HL  ++
Sbjct:  152 FRLLRQHGYPVSQEVFNGFKDDQGGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEVM 217          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.168e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FR+ R  G  +   VF++F  D+G+F+ SL  D +G+LSL+EAA++    ++ILDEA+ FT++HL SL+
Sbjct:  114 FRVFRTYGHNLPSSVFKRFTGDDGKFQQSLTEDAKGILSLYEAAHLGTTTDYILDEALKFTSSHLKSLL 182          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.749e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FR+ R  G  +   VF++F  D+G+F+ SL  D +G+LSL+EAA++    ++ILDEA+ FT++HL SL+
Sbjct:  114 FRVFRTYGHNLPSSVFKRFTGDDGKFERSLTEDAKGILSLYEAAHLGTTTDYILDEALEFTSSHLKSLL 182          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.565e-11
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN-DVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLR+ G  I  ++F  FKD+ G+FK+S+ N D++G+L+L+EA++    GE+IL+EA  FTT +L   V
Sbjct:  170 FRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEASFYVKNGENILEEARVFTTEYLKRYV 239          
The following BLAST results are available for this feature:
BLAST of CX292422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMS1_ARTAN4.228e-1453.03Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
5EAS_TOBAC4.228e-1450.75Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
RLC1_CITLI5.168e-1249.28(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
GBIS1_ARATH5.168e-1244.93(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]
GBIS2_ARATH6.749e-1244.93(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]
TPS2_CANSA2.565e-1147.14(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]

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Properties
Property NameValue
Genbank descriptionC04015E09SK FlavFr1 Citrus clementina cDNA clone C04015E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292422 ID=CX292422; Name=CX292422; organism=Citrus clementina; type=EST; length=209bp
ATTTTCGATTGCTTAGGCAGCAAGGAATCAAGATTTCATGTGATGTGTTT
GAGAAGTTCAAAGATGATGAGGGTAGATTCAAGTCATCGTTGATAAACGA
TGTTCAAGGGATGTTAAGTTTGCACGAGGCAGCATACATGGCAGTTCGCG
GAGAACATATATTAGATGAAGCCATTGCTTTCACTACCACTCACCTGAAT
TCATTGGTT
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