CX292436

Overview
NameCX292436
Unique NameCX292436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length232
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.577e-22
Identity = 51/77 (66.23%), Postives = 54/77 (70.13%), Query Frame = 2
Query:    2 LFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            LFGEK V VFG RNPEEIPW   GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK ++
Sbjct:   70 LFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSDI 146          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.284e-22
Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 2
Query:    2 LFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            LFGEK V VFG RNPEEIPWA  GAEYVVESTGVFT               VIISAPSKDAPMFV GVNE EYK ++
Sbjct:   38 LFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYKSDI 114          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.513e-22
Identity = 50/77 (64.94%), Postives = 56/77 (72.73%), Query Frame = 2
Query:    2 LFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            LFG+KP+TVFGVRNPEE PW E GAEYVVESTGVFT               V+ISAPS +APMFVVGVNE EYK ++
Sbjct:   69 LFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVGVNEKEYKKDI 145          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.864e-18
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +T++G R+P EIPWAE GA+YVVESTGVFT               VIISAPSKDAPMFV GVNE +Y P+L
Sbjct:   72 KSITIYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSKDAPMFVCGVNEDKYTPDL 144          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.055e-17
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    5 FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 229
            FG  PV V+  R+P EIPW + GA++VVESTGVFT               V+ISAPSKDAPMFV+GVNE++Y  E
Sbjct:   74 FGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMGVNENKYSDE 148          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 229
            KP++VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFV GVN   YKPE
Sbjct:   71 KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPE 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.501e-16
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            V  +  RNPEEIPWAETGAEY+VESTGVFT               VIISAPS DAPMFV+GVN   Y  +L
Sbjct:   74 VKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMFVMGVNHKSYTTDL 144          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K + VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFVVGVN   YKP++
Sbjct:   71 KHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDM 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            +TVF  R+P EIPWA   A+Y+VE+TGVFT               V+ISAPSKDAPMFV GVNE +Y P+L
Sbjct:   74 ITVFAHRDPAEIPWATAAADYIVEATGVFTLKDKAAAHFKGGAKKVVISAPSKDAPMFVCGVNEAKYTPDL 144          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   11 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 229
            +KP+TVF  R+P +IPW   GAEY+VESTGVFT               ++ISAPS DAPMFV GVN  +Y P+
Sbjct:   48 QKPITVFRKRDPVQIPWGSAGAEYIVESTGVFTTTEKASAHLKGGAKKIVISAPSADAPMFVCGVNLDKYDPK 120          
The following BLAST results are available for this feature:
BLAST of CX292436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
G3PE_MAIZE5.577e-2266.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU7.284e-2267.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR9.513e-2264.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GRAVE2.864e-1860.27Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA7.055e-1754.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYCU1.572e-1658.33Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_ERYGR3.501e-1659.15Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_YARLI1.019e-1556.16Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3PC_CHOCR1.738e-1554.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_AMAMU2.269e-1552.05Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC04015F12SK FlavFr1 Citrus clementina cDNA clone C04015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292436 ID=CX292436; Name=CX292436; organism=Citrus clementina; type=EST; length=232bp
TCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGG
AGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGA
GTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAA
GAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGG
GTGTCAATGAGCACGAGTACAAACCAGAGCTC
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