CX292436

Overview
NameCX292436
Unique NameCX292436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length232
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.300e-14
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 2
Query:   38 RNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   YKP++
Sbjct:   79 KDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSPDAPMFVMGVNHETYKPDI 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.300e-14
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            +T+F  R+P  I WA+ GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   72 ITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.300e-14
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            +T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS+DAPMFV+GVN  +Y   L
Sbjct:  102 ITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSRDAPMFVMGVNHEKYDKSL 172          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.535e-14
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 229
            KPV V+G +NP +I W   G +YVVESTGVFT               VIISAPS DAPMFV+G N  +Y P+
Sbjct:   70 KPVIVYGEKNPSDIKWGAAGRDYVVESTGVFTTVEKAEGHLKGGAKKVIISAPSADAPMFVMGCNLDQYDPK 141          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.535e-14
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN+ +Y   L
Sbjct:   70 KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNQDKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   59 KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKYNNTL 131          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYNNTL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +  F  R+P  IPW   GA Y+VESTGVFT               VIISAPS DAPMFV+GVN  EYK ++
Sbjct:   72 KKIRFFAERDPAAIPWGSAGAAYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNKEYKTDI 144          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.626e-13
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +  +  R+P  IPW + G +YVVESTGVFT               VIISAPS DAPMFV+GVNE  Y+P++
Sbjct:   72 KTIHFYQERDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVIISAPSADAPMFVMGVNEKSYRPDI 144          
The following BLAST results are available for this feature:
BLAST of CX292436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
G3P_COCHE7.300e-1455.38Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_CHICK7.300e-1453.52Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P1_JACOR7.300e-1452.11Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_LYOSH9.535e-1451.39Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_CRIGR9.535e-1452.05Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_SHEEP1.245e-1352.05Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_RABIT1.245e-1352.05Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_BOVIN1.245e-1352.05Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_ASPOR1.245e-1350.68Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_PARBA1.626e-1349.32Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]

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Properties
Property NameValue
Genbank descriptionC04015F12SK FlavFr1 Citrus clementina cDNA clone C04015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292436 ID=CX292436; Name=CX292436; organism=Citrus clementina; type=EST; length=232bp
TCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGG
AGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGA
GTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAA
GAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGG
GTGTCAATGAGCACGAGTACAAACCAGAGCTC
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