CX292436

Overview
NameCX292436
Unique NameCX292436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length232
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.623e-13
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +++F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.623e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 226
            + V   R+P +I W+ +GA+YV+ESTGVFT               VIISAPSKDAPM+VVGVNE ++ P
Sbjct:   74 IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNP 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.732e-13
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            +T+F  R+P  I W + GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN  +Y   L
Sbjct:   72 ITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 220
            +TVF  +NP +I W   GA+Y+VESTGVFT               V+ISAPS DAPMFVVGVN  +Y
Sbjct:   73 ITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPSADAPMFVVGVNLDKY 139          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +T+F  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 226
            ++VF    P EIPW + GA+YVVESTGVF                V++SAPS DAPMFV+GVNE ++ P
Sbjct:   73 ISVFQCMKPHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPSPDAPMFVMGVNEDKFDP 141          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 220
            K V  +  R+P  IPW+ETGA+Y+VESTGVFT               VIISAPS DAPM+V+GVN   Y
Sbjct:   71 KKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNETY 139          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2
Query:   38 RNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   YK ++
Sbjct:   79 KDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSDI 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +  F  R+P  IPW  TGA+Y+VESTGVFT               V+ISAPS DAPMFV+GVN   Y  ++
Sbjct:   71 KKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSYTKDI 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.072e-13
Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 229
            K + VF  ++P  IPW + GA YVVESTGVFT               V+ISAPS DAPM+V GVN   Y P+
Sbjct:   72 KSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAPSADAPMYVCGVNLDAYDPK 143          
The following BLAST results are available for this feature:
BLAST of CX292436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
G3P_CANFA3.623e-1350.68Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P1_SCHPO3.623e-1350.72Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_TRISI4.732e-1350.70Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_SCHCO6.180e-1352.24Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PIG6.180e-1350.68Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_ONCMY6.180e-1349.28Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_NEUCR6.180e-1352.17Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_CURLU6.180e-1353.85Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_ASPNG6.180e-1347.95Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_USTMA8.072e-1348.61Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

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Properties
Property NameValue
Genbank descriptionC04015F12SK FlavFr1 Citrus clementina cDNA clone C04015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292436 ID=CX292436; Name=CX292436; organism=Citrus clementina; type=EST; length=232bp
TCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGG
AGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGA
GTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAA
GAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGG
GTGTCAATGAGCACGAGTACAAACCAGAGCTC
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