CX292440

Overview
NameCX292440
Unique NameCX292440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.295e-42
Identity = 85/162 (52.47%), Postives = 107/162 (66.05%), Query Frame = 1
Query:   61 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            KFFVGGNWKCNGT E + K+VS LN A                      KS L     V+AQN W+ KGGAFTGE+SAE LV++   WVILGHSERR ++ E ++F+G K AYALS+ LKV+AC+GE LE+RE+G T  V  +Q KA A+ I++W NVV+AY
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQV--KSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAY 207          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.644e-41
Identity = 85/180 (47.22%), Postives = 109/180 (60.56%), Query Frame = 1
Query:    7 SSRFHRQTKQNSIVVMARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            SS  HR  +    +  + KFFVGGNWKCNGT + + K++S LN A                      KS L     ++ QN WV KGGAFTGE+S E L +L   WVILGHSERR ++ E ++F+G K AYALS GL VIAC+GE LE+RE+G T  V   Q KA A+ + +WDN+V+AY
Sbjct:   47 SSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQV--KSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAY 224          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.261e-40
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 1
Query:   40 SIVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            ++V MA   KFFVGGNWKCNGT + + K+VS LN A+                     KS L     ++ QN WV KGGAFTGE+S E L ++   WVILGHSERR ++ E + F+G K AYAL+ GL VIAC+GE LE+RE+G T  V  EQ KA A+ + +W+N+V+AY
Sbjct:   55 AVVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQV--KSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAY 223          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.192e-37
Identity = 81/165 (49.09%), Postives = 102/165 (61.82%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            M RKF VGGNWK NG    +  +   L                         +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL+ GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AY
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAY 163          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.702e-36
Identity = 77/166 (46.39%), Postives = 102/166 (61.45%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN-WDNVVLAY 546
            M RKF VGGNWK NG   ++ +IV+ L +                       K+++  +  VAAQNCW    GAFTGE+S  M+ ++ + WVILGHSERR +  E ++ V +KVA+AL  GLKVIAC+GETLE+RESG T  VV  Q KA+   I + W+N+VLAY
Sbjct:    1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYV--KTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.020e-36
Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            RKFFVGGNWK NG  + + +++ TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAY
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQK--LDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 77/164 (46.95%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   55 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            ARKFFVGGNWK NG    + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+   M+ +L   WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W+ VVLAY
Sbjct:    4 ARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 77/164 (46.95%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   55 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            +RKFFVGGNWK NG    + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAY
Sbjct:    4 SRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.027e-35
Identity = 77/164 (46.95%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   55 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+ALS GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAY
Sbjct:    3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.341e-35
Identity = 76/164 (46.34%), Postives = 103/164 (62.80%), Query Frame = 1
Query:   55 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAY
Sbjct:    4 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAY 165          
The following BLAST results are available for this feature:
BLAST of CX292440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE3.295e-4252.47Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH3.644e-4147.22Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN5.261e-4048.54Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA3.192e-3749.09Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_BOMMO2.702e-3646.39Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_CHICK6.020e-3647.85Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_PIG7.862e-3646.95Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_BOVIN7.862e-3646.95Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_RABIT1.027e-3546.95Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_CANFA1.341e-3546.34Triosephosphate isomerase OS=Canis familiaris GN=T... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04015G05SK FlavFr1 Citrus clementina cDNA clone C04015G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292440 ID=CX292440; Name=CX292440; organism=Citrus clementina; type=EST; length=548bp
GTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCAATCGTCGT
CATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACAT
CTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTGAAGTTCCT
TCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCC
TTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGCTCAAAATT
GCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATG
CTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAG
AGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATG
CACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAA
CAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGC
AATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGA
back to top