CX292440

Overview
NameCX292440
Unique NameCX292440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 8.419e-30
Identity = 71/168 (42.26%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTS-EEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAY 546
            M R FFVGGNWK N TS    K +V  LN+A+                     + +      VAAQN + ++ GAFTGE+S + + +  IP+VILGHSERR L +E+++ V  K   AL  GLKVI C+GETL++RE G T AV  EQ  A+ +++   +W N+V+AY
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPALYLLPI--QEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAY 166          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.100e-29
Identity = 69/167 (41.32%), Postives = 95/167 (56.89%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAY 546
            M RKFFVGGN+K NG +E    I+  LN A                      + +   +  VAAQN + +  GAFTGE+S + L   +I W ILGHSERR +L E+++F+  K   A+  GL+VI C+GETLE+RE+  T+ VV  Q  A A+++S   W  VV+AY
Sbjct:    1 MPRKFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPALYLLQA--REVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.450e-29
Identity = 66/165 (40.00%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            MAR FFVGGN+K NGT + +K+IV  LN A                        + +    V  QN + +  GA+TGE S + L ++   WVILGHSERR   +E +  V +K  +AL +GL VI C+GETLE++++G T+ VV  Q  A+  ++ +W NVV+AY
Sbjct:    1 MARTFFVGGNFKLNGTKKSIKEIVDRLNTASLPENVEVVICPPATYLDYTV-SLVSKKQVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 66/158 (41.77%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   79 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAY 546
            NWKCNG+ + + +++   N                        + L    F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A++ G  VIAC+GETL++RESG T  VV  Q  AIA+K+  ++W  VV+AY
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKER-LSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAY 166          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 68/158 (43.04%), Postives = 90/158 (56.96%), Query Frame = 1
Query:   79 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAY 546
            NWKCNG+   +  ++ TLN A                      + L    F +AAQN  + + GAFTGEVS ++L +  I WV+LGHSERR    E+N+ V +KVA A + G  VI CVGET E+RE+G T AVV  Q  A+A+K+S   W  VV+AY
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKAR-LTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAY 167          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 72/172 (41.86%), Postives = 97/172 (56.40%), Query Frame = 1
Query:   55 ARKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFH-----VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAY 546
            A KF VGGNWKCNGT   ++ +   +  + +                     + +L  + +     V+A+N W  K GA+TGEV   MLV+  +P+VILGHSERR + +ESN+ V +KV  A+  GLKVIAC+GET  QR +  T  VVA Q KAI   IS   W N++LAY
Sbjct:    3 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWT-KSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAY 173          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27
Identity = 67/158 (42.41%), Postives = 90/158 (56.96%), Query Frame = 1
Query:   79 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAY 546
            NWKCNGT+  ++K+V   NE                       K  LR+  +V +    + K GAFTGEVS  +L ++ + WVILGHSERR    E+++ V  KV+ A  +G  VIAC+GETL+QRE+  T  VV  QT AIA K++   W+ VVLAY
Sbjct:   12 NWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAK--LRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAY 167          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.671e-27
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAY 546
            R FFVGGN K NG+   ++ +   +NE+                        L    F V +QNC+    GAFTGE+SA MLV+L IP+VI+GHSERR + +ES++ +  K  YA+S GL VI C+GE L  R+S +T  +++EQ K  A      W  +V+AY
Sbjct:    5 RTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAY 168          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.426e-23
Identity = 58/168 (34.52%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   55 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAY 546
            AR+ F+GGN+KCNG+ + +K  V+++   +                      +  +    +AAQN ++   GA+TGE S EML+++ +  VI+GHSERR ++ E+N+    K   AL +G+ VI C GETL++R++ +T+ V   Q +A+ ++I      W+NVV+AY
Sbjct:    3 ARRPFIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKC-LKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAY 169          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.844e-23
Identity = 63/164 (38.41%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            R+  V GNWK N T +E ++   +   +                       K++  S   +AAQNC     GAFTGEVS  ML      +VILGHSERR L  E+N+ V  KV  AL+ GL+VI CVGETL++RE+G T  +V  Q       +S+   +V+AY
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAY 165          
The following BLAST results are available for this feature:
BLAST of CX292440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPC78.419e-3042.26Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_EMENI1.100e-2941.32Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_CANGA2.450e-2940.00Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_TRYBB3.537e-2841.77Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TRYCR7.880e-2843.04Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_ENTHI7.880e-2841.86Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_LEIME1.029e-2742.41Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_DICDI6.671e-2739.63Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPI2_GIALA3.426e-2334.52Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_CHLP85.844e-2338.41Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]

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Properties
Property NameValue
Genbank descriptionC04015G05SK FlavFr1 Citrus clementina cDNA clone C04015G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292440 ID=CX292440; Name=CX292440; organism=Citrus clementina; type=EST; length=548bp
GTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCAATCGTCGT
CATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACAT
CTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTGAAGTTCCT
TCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCC
TTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGCTCAAAATT
GCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATG
CTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAG
AGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATG
CACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAA
CAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGC
AATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGA
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