CX292440

Overview
NameCX292440
Unique NameCX292440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 61/165 (36.97%), Postives = 86/165 (52.12%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAY 546
            RK  + GNWK N T +E  K+V  L                         K++  S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A    +  I C GE+LEQRE+G+T  V+  Q KA    ++N   + +V+AY
Sbjct:    2 RKAIIAGNWKMNKTIDEAVKMVEELKPL-VKDATCDVVVCPTFVCLDAVKKAVAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKAFEHNITPILCCGESLEQRENGTTNKVIEAQIKADIAGLTNEQVEKLVIAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.591e-20
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAY 546
            M R   V GNWK NG     K +++ + +A                      +S +     + +QN   ++ GAFTGEVSA ML  +   +VI+GHSERRAL  E++  +  K A+A + GL  I CVGETLE+R+SG+T  +V  Q +A+ +   ++ + N ++AY
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAY 163          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_PELPB (Triosephosphate isomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 60/164 (36.59%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            R+  V GNWK N + +E V+     L                         K +  S+  + AQNC     GAFTGEVSA M++ +    VI+GHSERR    E+N  V  ++  ALS GL VI CVGETL +RESG    V++ Q +   + I +   +V+AY
Sbjct:    2 RRKIVVGNWKMNNSVAESVQLATDVLAALGEGFSGCEVGIAPTYLALDATEKVIAESEVQLVAQNCHYENDGAFTGEVSARMILAVGCSSVIIGHSERRQYFGETNATVNLRIKKALSEGLNVILCVGETLAERESGVMETVISSQVREGLDGIIDISAIVIAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 58/169 (34.32%), Postives = 90/169 (53.25%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVST------LNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            +K  + GNWK N T +E +  ++       LN A+                     + L +++ ++ AQN    + GAFTGE+SA+ML +++  +VI+GHSERR    E+N  V  K   A+  GL  I CVGE+LE+ E+G T AV+ +Q K   E + +   +V+AY
Sbjct:    2 KKLLIIGNWKMNKTYDEARDFINAFSNAYALNGAKISENIEYGIAPSFTNMSLFNKELLEKTNINLVAQNINENRSGAFTGEISAQMLKSINAKYVIVGHSERRQNYRETNKIVNQKAKAAIENGLIPIICVGESLEEYEAGKTKAVIKKQIKQSLEAL-DLSKIVVAY 169          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 63/165 (38.18%), Postives = 86/165 (52.12%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQT-KAIAEKISNW-DNVVLAY 546
            RK F+ GNWK   T  E    V  L ++                      ++L  S+  + AQN    K GAFTGEVS  ML ++ + +VILGHSERRA   E+++ +  K+  A + GL  I CVGETLE+RE G T AVV  Q  K +A   +   +N+ +AY
Sbjct:    2 RKPFIAGNWKMYKTPVEAAGFVRELIDSLKDVSGVDVAVCPPFPALWPVKEALEGSNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAY 166          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 62/165 (37.58%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAY 546
            RK  + GNWK N T +E  K+V  L                         K+   S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A +  +  I C GETLEQRESG T   +A Q K     ++    + VV+AY
Sbjct:    2 RKAIIAGNWKMNKTVDEAVKVVEELKPL-VKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAAFAHNITPIVCCGETLEQRESGVTNNFIACQIKVDIAGLTKEQAEKVVIAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 61/165 (36.97%), Postives = 86/165 (52.12%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAY 546
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++ +    ++  ++LAY
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAY 166          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 59/165 (35.76%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAY 546
            R+  V GNWK N T   V+ +++ L +A                           +     AQ+C V   GAFTGE SA ML      + ++GHSERR +  ES++ V DK A     GL  + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ Y
Sbjct:    2 RQALVMGNWKLNATKGSVEALINGLVDAAKDNATVEVAVCPPAVFIPQVEALTADTAITYGAQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGY 166          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 57/167 (34.13%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAY 546
            M+R+  + GNWK N  +E    +   + +A                       +++ +   + AQN +  + GAFTGEV+A ML ++   +VILGHSERR L+ E++  V  K+  AL+  L  I CVGETLEQRE+  T +V+  Q +   E +  +   N+V+AY
Sbjct:    1 MSRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAY 167          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   58 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK 513
            R+  V GNWK NG  ++V ++VS + E                         L      V AQN + +  GA+TGE+SA ML +    +V++GHSERR   +E  +FV  K  +    G+  + CVGETL +RE+G T  V+A+Q  A++ K
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAK 153          
The following BLAST results are available for this feature:
BLAST of CX292440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOB81.219e-2036.97Triosephosphate isomerase OS=Clostridium beijerinc... [more]
TPIS_ALCBS1.591e-2035.33Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_PELPB2.079e-2036.59Triosephosphate isomerase OS=Pelodictyon phaeoclat... [more]
TPIS_MYCPU2.079e-2034.32Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_CARHZ2.079e-2038.18Triosephosphate isomerase OS=Carboxydothermus hydr... [more]
TPIS_CLOBB2.715e-2037.58Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_BACTN2.715e-2036.97Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_VIBSA3.545e-2035.76Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_RHOBA3.545e-2034.13Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_LEGPH3.545e-2034.87Triosephosphate isomerase OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionC04015G05SK FlavFr1 Citrus clementina cDNA clone C04015G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292440 ID=CX292440; Name=CX292440; organism=Citrus clementina; type=EST; length=548bp
GTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCAATCGTCGT
CATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACAT
CTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTGAAGTTCCT
TCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCC
TTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGCTCAAAATT
GCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATG
CTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAG
AGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATG
CACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAA
CAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGC
AATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGA
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