CX292449

Overview
NameCX292449
Unique NameCX292449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CAN2_PIG (Calpain-2 catalytic subunit (Fragment) OS=Sus scrofa GN=CAPN2 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 34/121 (28.10%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   68 NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGS 430
            +  FS+ T R+++    +  + K+G KEF  ++  +Q ++ ++ ++D DRSG ++S E+R+AL   GF +   +  ++V RF         I++DNF+ C + ++ L    K+ D+  +G+
Sbjct:  193 SDGFSIETCRIMVDMLDSDGSAKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARF---ADDQLIIDFDNFVRCLVRLETLFRISKQLDSENTGT 310          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CPNS1_HUMAN (Calpain small subunit 1 OS=Homo sapiens GN=CAPNS1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.394e-11
Identity = 32/127 (25.20%), Postives = 69/127 (54.33%), Query Frame = 2
Query:   77 FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            F + T R ++    +    K+G +EF  ++++++ W+A++++ D DRSG I S+EL  A  + GF ++  + ++++ R+    G    +++DNFI C + +  +   FK  D   +G      + ++
Sbjct:  139 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGN---MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWL 262          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CPNS2_MOUSE (Calpain small subunit 2 OS=Mus musculus GN=Capns2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 38/138 (27.54%), Postives = 74/138 (53.62%), Query Frame = 2
Query:   17 NSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRF-DKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSG 427
            N  L   KEL+       + FSL T R ++    +    K+G +EF  ++++++ W+ +F++ D D SG + S++L  A+ + GF ++  +  ++V R+ D+ GG    ++++NFI C + +  +   FK  D    G
Sbjct:  104 NKVLSKHKELK------TEGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVFKQYDSDHSGSLGSSQLHGAMQAAGFQLNEQLYLMIVRRYADEDGG----MDFNNFISCLVRLDAMFRAFKALDRDRDG 231          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CPNS1_RABIT (Calpain small subunit 1 OS=Oryctolagus cuniculus GN=CAPNS1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 33/127 (25.98%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   77 FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            F L T R ++    +    K+G +EF  ++++++ W+A++++ D DRSG I S EL  A  + GF ++  + ++++ R+    G    +++DNFI C + +  +   FK  D   +G      + ++
Sbjct:  137 FGLDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTICSRELPGAFEAAGFHLNEHLYNMIIRRYSDEAGN---MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWL 260          
The following BLAST results are available for this feature:
BLAST of CX292449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CAN2_PIG5.662e-1128.10Calpain-2 catalytic subunit (Fragment) OS=Sus scro... [more]
CPNS1_HUMAN7.394e-1125.20Calpain small subunit 1 OS=Homo sapiens GN=CAPNS1 ... [more]
CPNS2_MOUSE9.657e-1127.54Calpain small subunit 2 OS=Mus musculus GN=Capns2 ... [more]
CPNS1_RABIT9.657e-1125.98Calpain small subunit 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionC04015H03SK FlavFr1 Citrus clementina cDNA clone C04015H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292449 ID=CX292449; Name=CX292449; organism=Citrus clementina; type=EST; length=461bp
GTTGGCCGACCGGGACAACAGCGGCCTCATCGACGATAAGGAGTTGCAAG
GAGCCTTGTCTTCTTACAATCAGAGCTTCAGCTTGAGAACCGTTCGTCTG
CTTATGTACACATTCACCAACACTAACGCGAGAAAAATCGGGCCTAAGGA
GTTCATCCAAGTGTTTCACAGTCTTCAAAACTGGAGGGCCATGTTTGAGA
AAGTGGACAGGGACAGGAGTGGAAAGATTGATTCGAATGAGTTGCGGGAG
GCTCTTATGAGTCTAGGTTTTGCGGTTTCACCCGTGGTATTGGACTTGCT
TGTCACTAGGTTTGACAAAACTGGTGGCAAAAGCAAGGCCATTGAATATG
ATAACTTCATCGAGTGCTGTCTCACGGTTAAGGGGTTAACGGAGAAATTT
AAGGAGAGGGATACTACGTACTCTGGATCTGCAACTTTCACTTACGAGAA
TTTCATGCTGG
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