CX292453

Overview
NameCX292453
Unique NameCX292453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.817e-35
Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            +AVK LS  S QG  +F  E++ I+ + HRNLVKL GCC E + +MLVYE++PN SLD  +F +    L DW  R++I LG+ARG++YLH+++ +RI+HRD+KASNILLD  + P+ISDFG A+++  ++   +T RV GT G
Sbjct:  719 VAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHL-DWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHIST-RVAGTIG 859          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.197e-35
Identity = 76/147 (51.70%), Postives = 105/147 (71.43%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIF--DESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARV--FGGEEISTNTNRVVGTYG 433
            IAVK+LS  S QG  EF NE+ +I+ LQH NLVKL GCC+E ++ +LVYE++ N  L   +F  DES +  LDW  R  I LGIA+G+ +LH++SR++I+HRD+KASN+LLD+++N +ISDFG A++   G   IST   R+ GT G
Sbjct:  703 IAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHIST---RIAGTIG 846          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: CRK2_ARATH (Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.071e-34
Identity = 71/144 (49.31%), Postives = 103/144 (71.53%), Query Frame = 2
Query:    2 EIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            +IAVKRL   +     +F NEV +I+ ++H+NLV+LLGC     E +LVYE++ NKSLD FIFD +R + LDW++R+ II+G A G++YLH+ S ++IIHRD+KASNILLD ++  +I+DFG AR F  ++   +T  + GT G
Sbjct:  349 DIAVKRLFFNNRHRATDFYNEVNMISTVEHKNLVRLLGCSCSGPESLLVYEYLQNKSLDRFIFDVNRGKTLDWQRRYTIIVGTAEGLVYLHEQSSVKIIHRDIKASNILLDSKLQAKIADFGLARSFQDDKSHIST-AIAGTLG 491          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: CRK1_ARATH (Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.826e-34
Identity = 68/143 (47.55%), Postives = 104/143 (72.73%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            +AVK+L   + +  ++F NEV LI+ +QH+NLV+LLGC +E  + +LVYE++ N+SLD  +F ++   +L WK+RF+II+GI+ G+ YLH+ S ++IIHRD+K SNILLD  ++P+I+DFG  R  G ++  TNT  + GT G
Sbjct:  343 VAVKKLFFNTREWADQFFNEVNLISGVQHKNLVRLLGCSIEGPKSLLVYEYVHNRSLDQILFMKNTVHILSWKQRFNIIIGISEGLEYLHRGSEVKIIHRDIKTSNILLDRNLSPKIADFGLIRSMGTDKTQTNTG-IAGTLG 484          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.385e-34
Identity = 72/143 (50.35%), Postives = 101/143 (70.63%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            +AVKRL   + Q ++ F NEV LI+++ H+NLVKLLGC +   E +LVYE++ N+SL  ++F     Q L+W KRF IILG A G+ YLH++S LRIIHRD+K SNILL+++  PRI+DFG AR+F  ++   +T  + GT G
Sbjct:  348 VAVKRLFFNTKQWVDHFFNEVNLISQVDHKNLVKLLGCSITGPESLLVYEYIANQSLHDYLFVRKDVQPLNWAKRFKIILGTAEGMAYLHEESNLRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHIST-AIAGTLG 489          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.313e-34
Identity = 73/144 (50.69%), Postives = 102/144 (70.83%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQL-LDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            IAVK+LS+ S QG  EF  E+ +I+ LQH NLVKL GCC+E  E +LVYE++ N SL   +F   +++L LDW  R  I +GIA+G+ YLH++SRL+I+HRD+KA+N+LLD  +N +ISDFG A++   E    +T R+ GT G
Sbjct:  694 IAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHIST-RIAGTIG 836          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.184e-33
Identity = 72/144 (50.00%), Postives = 103/144 (71.53%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQL-LDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            IAVK+LS+ S QG  EF  E+ +I+ LQH NLVKL GCC+E  E +LVYE++ N SL   +F   +++L LDW  R  + +GIA+G+ YLH++SRL+I+HRD+KA+N+LLD  +N +ISDFG A++   EE +  + R+ GT G
Sbjct:  692 IAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKL-DEEENTHISTRIAGTIG 834          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.672e-33
Identity = 72/149 (48.32%), Postives = 102/149 (68.46%), Query Frame = 2
Query:    2 EIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVF--GGEEI---STNTNRVVGTYG 433
            EIA+KRL  +  +  +E  NE+ +I++ QH+NLV+LLGCC       +VYEF+ N SLD+ +F+  +K+ LDWKKR  IILG A G+ YLH+    +IIHRD+KASNILLD +  P+ISDFG A+ +  GG++I   S + + + GT G
Sbjct:  355 EIAIKRLHVSGKKPRDEIHNEIDVISRCQHKNLVRLLGCCFTNMNSFIVYEFLANTSLDHILFNPEKKKELDWKKRRTIILGTAEGLEYLHE--TCKIIHRDIKASNILLDLKYKPKISDFGLAKFYPEGGKDIPASSLSPSSIAGTLG 501          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.002e-32
Identity = 71/144 (49.31%), Postives = 101/144 (70.14%), Query Frame = 2
Query:    5 IAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQL-LDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            +AVK+LS+ S QG  EF NE+  I+ LQH NLVKL G C+E+ + +L YE+M N SL   +F    KQ+ +DW  RF I  GIA+G+ +LH++S L+ +HRD+KA+NILLD+++ P+ISDFG AR+   E+   +T +V GT G
Sbjct:  706 VAVKQLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSLSSALFSPKHKQIPMDWPTRFKICCGIAKGLAFLHEESPLKFVHRDIKATNILLDKDLTPKISDFGLARLDEEEKTHIST-KVAGTIG 848          
BLAST of CX292453 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.223e-31
Identity = 64/146 (43.84%), Postives = 100/146 (68.49%), Query Frame = 2
Query:    2 EIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQ--LLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYG 433
            +IAVK+++  S QG+ EF  E+  + +L+H+NLV L G C +K++ +L+Y+++PN SLD  ++   R+   +L W  RF I  GIA G+LYLH++    +IHRD+K SN+L++++MNPR+ DFG AR++      +NT  VVGT G
Sbjct:  387 QIAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLARLY-ERGSQSNTTVVVGTIG 531          
The following BLAST results are available for this feature:
BLAST of CX292453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
Y1561_ARATH2.817e-3550.35Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH8.197e-3551.70Probable LRR receptor-like serine/threonine-protei... [more]
CRK2_ARATH1.071e-3449.31Cysteine-rich receptor-like protein kinase 2 OS=Ar... [more]
CRK1_ARATH1.826e-3447.55Cysteine-rich receptor-like protein kinase 1 OS=Ar... [more]
CRK3_ARATH2.385e-3450.35Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
Y5343_ARATH5.313e-3450.69Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH1.184e-3350.00Probable LRR receptor-like serine/threonine-protei... [more]
CRK43_ARATH7.672e-3348.32Putative cysteine-rich receptor-like protein kinas... [more]
RKF1_ARATH1.002e-3249.31Probable LRR receptor-like serine/threonine-protei... [more]
LRKA2_ARATH3.223e-3143.84Lectin-domain containing receptor kinase A4.2 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04015H08SK FlavFr1 Citrus clementina cDNA clone C04015H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292453 ID=CX292453; Name=CX292453; organism=Citrus clementina; type=EST; length=435bp
GGAGATAGCTGTCAAAAGGTTATCAACAACATCAGGACAAGGAATTGAGG
AATTCAAAAATGAGGTCTTATTGATAGCAAAACTTCAACACAGAAATCTT
GTAAAGCTCTTGGGTTGTTGTTTGGAAAAAGATGAAAAGATGTTAGTCTA
TGAGTTCATGCCTAACAAAAGCTTGGACTACTTTATTTTTGATGAATCAA
GGAAGCAATTGTTGGATTGGAAAAAGCGCTTCGATATAATTTTAGGGATA
GCTCGAGGGGTCCTATATCTACATCAAGATTCGAGGTTAAGAATTATCCA
TCGAGACTTGAAAGCTAGTAATATTCTTCTAGATGAAGAGATGAACCCTA
GAATCTCAGATTTTGGTACAGCTAGAGTATTTGGAGGAGAGGAGATATCA
ACAAATACAAATAGGGTGGTTGGAACGTATGGCTA
back to top