CX292470

Overview
NameCX292470
Unique NameCX292470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_LEPVR (50S ribosomal protein L14, chloroplastic OS=Lepidium virginicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_LACSA (50S ribosomal protein L14, chloroplastic OS=Lactuca sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 389
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_HELAN (50S ribosomal protein L14, chloroplastic OS=Helianthus annuus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 389
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_CRUWA (50S ribosomal protein L14, chloroplastic OS=Crucihimalaya wallichii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_CHAGL (50S ribosomal protein L14, chloroplastic OS=Chaetosphaeridium globosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 38/119 (31.93%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ +  I + G   +        +GD ++  VK+  P++   + +V+ AVIVR  K  +RK+G  + F++NA VI+N +G  +G+ I GP+ +E  +  + +I S A  ++
Sbjct:    8 LNVADNSGARKIMCIRILGGSNK----KYGHIGDTIIGVVKEAIPNMTLKKSEVVRAVIVRTCKELKRKNGTILRFDENAAVIINQEGNPRGTRIFGPVARELREANFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_CAPBU (50S ribosomal protein L14, chloroplastic OS=Capsella bursa-pastoris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_BARVE (50S ribosomal protein L14, chloroplastic OS=Barbarea verna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_ARATH (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_AETGR (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
BLAST of CX292470 vs. ExPASy Swiss-Prot
Match: RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   93 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 437
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CX292470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RK14_LEPVR9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Lepidi... [more]
RK14_LACSA9.785e-1135.2950S ribosomal protein L14, chloroplastic OS=Lactuc... [more]
RK14_HELAN9.785e-1135.2950S ribosomal protein L14, chloroplastic OS=Helian... [more]
RK14_CRUWA9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Crucih... [more]
RK14_CHAGL9.785e-1131.9350S ribosomal protein L14, chloroplastic OS=Chaeto... [more]
RK14_CAPBU9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Capsel... [more]
RK14_BARVE9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Barbar... [more]
RK14_ARATH9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Arabid... [more]
RK14_AETGR9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_AETCO9.785e-1133.6150S ribosomal protein L14, chloroplastic OS=Aethio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04016B02SK FlavFr1 Citrus clementina cDNA clone C04016B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292470 ID=CX292470; Name=CX292470; organism=Citrus clementina; type=EST; length=656bp
GGCCTTTAACTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGT
AACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTG
TGCTGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAA
TCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTT
ATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCC
CGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCT
TCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAA
ATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTT
GTGGCCGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAG
ACCGATAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGA
AGTTTCATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGAT
TTTGTTATTCTAGTTTTGTAAGTGGTATGAAAGTTTGGAGTTTTGTTGAT
CTTGATATCATTTTCATGCTGATTGTGTTTTTGAATTCAACTTCCCCATG
CATACG
back to top