CX292473

Overview
NameCX292473
Unique NameCX292473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 85/233 (36.48%), Postives = 128/233 (54.94%), Query Frame = 2
Query:    2 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGEL-KLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            +GLLSDGGVHS +  ++  +K A +RGAK + +HI TDGRD    S++ ++E +E  + EL G     +IAS  GR Y  +DR +N W+ VK+ +DA   G A  + K A EAV+ L      ND+++   VI   NGK    + DGD+V+  NFR+DR   L +A   +DF  F R + P +  +  + +Y     K  +     P+ +  T GEY+   G++    +ET K
Sbjct:  120 LGLLSDGGVHSHISHIKASIKMAHDRGAK-VYVHIFTDGRDTAPQSALQYIEELETFMKELGG----GRIASVTGR-YFALDR-DNRWERVKKAYDAIACGSAEFEAKDAKEAVE-LAYARGENDEFIQATVIPRNNGKPAR-VKDGDSVIFMNFRSDRARQLTEAFIMDDFADFHRCKTPVLSAFVTLTEYKKNFEKFGALVAYRPTSLRNTFGEYVSKKGLKQLRIAETEK 343          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 81/232 (34.91%), Postives = 127/232 (54.74%), Query Frame = 2
Query:    2 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPS-EIDRTSGEYLVHNGVRTFACSETVK 694
            +GL S GGVHS +  L+ L++ A + G   I +H   DGRDV   S    +E +++ +       V  +IA+  GR Y  MDR +N WD  +  ++A   G+  +  K  V+A+ +   +   ND+++ P VIVDENG+ +G + + D V+ FNFR DR   L  A   ++FD F+R   PK+ +  M +YD +L++P   +  PS E+  T GE L   G++    +ET K
Sbjct:  116 MGLFSYGGVHSHMKHLRALIEFAKDEGITEIFIHAFLDGRDV---SPRAALEDMKEHVEYCNNLSV-GKIATVSGRYYA-MDR-DNRWDRTEDAYNAITRGDGVYYSKGPVDAISEGYGR-GENDEFIKPTVIVDENGRPIGRMNENDTVIFFNFRPDRARQLTYAFVNDEFDNFERKSHPKVHFVCMTEYDEKLEVP---IAFPSEELKNTLGEVLSKEGIKQLRIAETEK 337          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 84/231 (36.36%), Postives = 129/231 (55.84%), Query Frame = 2
Query:    2 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            +GLLS+GGVHS +D L+ LL+ A ++G +++ +H   DGRDV   S   F+  +E  + E+   GV  +IA+  GR Y  MDR +N W+ V+  ++A  LGE   K  SAVEA++K     N  D+++ P  +++E+G  V  I DGD+V+ FNFR DR   + +A+   +F  F+R +   + +  M QYD  L+        P     T GEY+   G+     +ET K
Sbjct:  114 MGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKDFIVELENAMKEI---GV-GEIATISGR-YYAMDR-DNRWERVELAYNAMALGEG-EKASSAVEAIEK-SYHDNKTDEFVLP-TVIEEDGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQL-HVNFVCMTQYDKTLECVD-VAYRPESYTNTLGEYVASKGLNQLRIAETEK 333          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_GEOKA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus kaustophilus GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 81/231 (35.06%), Postives = 131/231 (56.71%), Query Frame = 2
Query:    5 GLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E    GV  +IA+  GR Y +MDR +  WD V++ + A V GE P  ++  +E ++   +     D+++ P VIV E+G+ V  I D DA++ +NFR DR + ++     EDF +FDR  + PK  +   L +  E  +  +    P+ +D T GE L  +G+R    +ET K
Sbjct:  115 GLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV-GEIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSE-TVKGYVAFKPTNLDNTLGEVLSQHGLRQLRIAETEK 336          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 81/231 (35.06%), Postives = 131/231 (56.71%), Query Frame = 2
Query:    5 GLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E    GV  +IA+  GR Y +MDR +  WD V++ + A V GE P  ++  +E ++   +     D+++ P VIV E+G+ V  I D DA++ +NFR DR + ++     EDF +FDR  + PK  +   L +  E  +  +    P+ +D T GE L  +G+R    +ET K
Sbjct:  115 GLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV-GEIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSE-TVKGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEK 336          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 88/232 (37.93%), Postives = 127/232 (54.74%), Query Frame = 2
Query:    2 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            +GLLSDGGVHS  D L  + K A++RGA++I LH   DGRD    S+   +E ++   A+L GKG   +IAS  GR Y  MDR +N WD V   ++  V   A +   +A+  ++    +  +++     FV     G AV  + DGDAV+  NFRADR   L++A    DF +F R R PK+  Y G+ QY  ++  P+ +  +PS ++   GEYL  NG      +ET K
Sbjct:  116 LGLLSDGGVHSHQDHLVAMAKLAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL-GKG---RIASLIGR-YYAMDR-DNRWDRVSAAYNLIVDSAAEYTADTALAGLEAAYARDESDE-----FVKATRIGDAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAPAAF--APSSLNNVLGEYLAKNGKTQLRIAETEK 333          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 83/232 (35.78%), Postives = 129/232 (55.60%), Query Frame = 2
Query:    5 GLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPK-IRYAGMLQYDGELKLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K + +L       +IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+    + +     P E+    GE L + G+     +ET K
Sbjct:  115 GLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAMNDLN----YGEIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYNP--SVDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETEK 335          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 83/232 (35.78%), Postives = 129/232 (55.60%), Query Frame = 2
Query:    5 GLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPK-IRYAGMLQYDGELKLPSHYLVSPSEIDRTSGEYLVHNGVRTFACSETVK 694
            GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+    + +     P E+    GE L + G+     +ET K
Sbjct:  115 GLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVNAEG-EKFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYNP--SIDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETEK 335          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_SHESR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 86/232 (37.07%), Postives = 126/232 (54.31%), Query Frame = 2
Query:    2 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPSE-IDRTSGEYLVHNGVRTFACSETVK 694
            +GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G+A  ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P  Y   PSE +  T GE L + G      SET K
Sbjct:  116 MGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKAKFQYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEK 336          
BLAST of CX292473 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 86/232 (37.07%), Postives = 126/232 (54.31%), Query Frame = 2
Query:    2 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPSE-IDRTSGEYLVHNGVRTFACSETVK 694
            +GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G+A  ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P  Y   PSE +  T GE L + G      SET K
Sbjct:  116 MGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKAKFQYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEK 336          
The following BLAST results are available for this feature:
BLAST of CX292473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
GPMI_THICR6.992e-2936.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METBU9.132e-2934.912,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPE9.132e-2936.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOKA1.193e-2835.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST1.193e-2835.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEP11.558e-2837.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW61.558e-2835.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF1.558e-2835.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESR2.034e-2837.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM2.034e-2837.072,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC04016B05SK FlavFr1 Citrus clementina cDNA clone C04016B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292473 ID=CX292473; Name=CX292473; organism=Citrus clementina; type=EST; length=707bp
TATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTC
AGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTT
CATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATT
CGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTG
ACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGATGGACCGT
TATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCCCAAGTTCT
TGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAAC
TAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATT
GTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGT
TGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCC
TTGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATC
CGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCA
TTACCTTGTGTCTCCCTCAGAGATAGACAGAACATCTGGTGAATATTTAG
TGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTGGAC
ATGTCAC
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