CX292477

Overview
NameCX292477
Unique NameCX292477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683
            +   V+ G     ++V   + K  +  D+ TF   +  C    A    K +H  + R      +   N +++MYS+C  ++++  VF  M+ RD+ +W  MI  +   G GE A++ F+  +++G+ PD  +F+ +  ACS  G V EG+  FE
Sbjct:  481 ISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFE 634          

HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  237 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668
            K G   EA+E  G L +  +S D  TF  +++AC      E    V+E +  +     +   N ++ MYS    +  A  VF  M  RDL SW+++I+G++ +G  E+A++I+ + K + + PD      V  A   L  V +G
Sbjct:   83 KNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 55/194 (28.35%), Postives = 95/194 (48.97%), Query Frame = 3
Query:  108 SGNIQNGMM--ASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680
            +G I+ G +  A ++ +   H DD + ++           + G+   G   E+      L++  +S +  + + ++ AC  + + E  K +H  VE+      VS  N ++ MYS C ++  A  VF  M E R + SW +MI G A +G GE+AV +F++    G+ PD   F+ +  ACS  G + EG  +F
Sbjct:  211 AGYIKAGELESAKRIFSEMPHRDDVSWST----------MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYF 394          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR80_ARATH (Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 44/155 (28.39%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            +   V  G  +EA+     + ++ +  +  TFS ++ A      L E   +H  V ++     +S  N ++ MY +C + +DA+ +FS ++E ++ S++TMI+G++ NG G+ A+ +FS  + +G +P+   F+ + SAC  +G V  G  +F+S
Sbjct:  410 ISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKS 564          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  147 LNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680
            L +CK      +  R          + G    G  K+A+EV   ++K  I  +  T   ++ A     +LE  + +H + E   S +R+    G  ++ MYS+C  ++ A  VF  +   ++ +W  MI GFA +G   DA+D F + +QAG++P D  ++ + +ACS  G V EG  +F
Sbjct:  221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAED--SGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYF 398          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK-QAGLKPDDQIFVGVFSACS 644
            G  + G  +EA+E+   L  + +S +  T++ L+ A      L+  K  H HV R   P      N ++ MYS+C ++  A  +F NM ER   SW+ M+ G++K+GLG + +++F   + +  +KPD    + V S CS
Sbjct:  228 GYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 367          

HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 39/160 (24.38%), Postives = 81/160 (50.62%), Query Frame = 3
Query:  210 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSAC-----SALGDVVEGML 674
            T+  +  L   G+++EA+  + +L  +   +    +  L+ AC D +AL + + VH H+ +            +L  Y +CD ++DA  V   M E+++ SW  MI+ +++ G   +A+ +F++  ++  KP++  F  V ++C       LG  + G++
Sbjct:   23 TILPISQLCSNGRLQEALLEMAMLGPE---MGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLI 179          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 47/158 (29.75%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  222 LDGLVKEGKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVF--SNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            +DG VK G+  +A+E+   + +   S  +  T   ++ AC    AL   K VH ++  +  PL V     ++ MY++C S+ DA+SVF  +++ E D   W+ +I G A +G   +++ +F + +++ + PD+  F+ + +ACS  G V E    F+S
Sbjct:  212 IDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKS 369          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 3
Query:  168 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            D+  E S  S N      + G  + G  ++AI +   ++K   S +  T + ++ AC    AL   K VH+ V        +     ++ MY++C S+ +A  +F  MT+++  +W+TMI+G+  +G G++A++IF +   +G+ P    F+ V  ACS  G V EG   F S
Sbjct:  378 DESPEKSLPSWN----AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 46/150 (30.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  234 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF-KQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680
            VK  +  EA ++   ++   +  +  T   L+QA     +L   + VH++  +    L       ++ MYS+C S+ DA  VF  M  + L +W++MIT    +G GE+A+ +F +  ++A ++PD   FVGV SAC+  G+V +G+ +F
Sbjct:  227 VKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYF 376          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP203_ARATH (Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 46/146 (31.51%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  234 VKEGKVKEAIEVLGLL--EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVE 665
            V  G + EA  +L L+  +K     D  TFS L+ AC     +E+ K +H  + ++     +     +L MY++ + + DA   F +M  R++ SW+ MI GFA+NG G +A+ +F Q     L+PD+  F  V S+C+    + E
Sbjct:  219 VLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWE 360          

HSP 2 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683
            G  + G+ +EA+ + G +  + +  D  TF+ ++ +C    A+ E K V   V +  S   +S  N ++  YS   ++ +A   F ++ E DL SW ++I   A +G  E+++ +F    Q  L+PD   F+ V SACS  G V EG+  F+
Sbjct:  316 GFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQK-LQPDKITFLEVLSACSHGGLVQEGLRCFK 466          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 42/135 (31.11%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  264 EVLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALG 653
            E L L ++   S + P   T   ++ AC    A++  + +H ++++ L  +    S    ++ MY++C  ++ A  VF+++  + L+SW+ MI GFA +G  + + D+FS+ ++ G++PDD  FVG+ SACS  G
Sbjct:  350 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484          

HSP 2 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 48/211 (22.75%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   27 QNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 659
            QNG   + + + + + ++P+     SY+  I+       + N  K  D+       S N      + G  + G  KEA+E+   + K  +  D  T   ++ AC  + ++E  + VH  ++       +   N ++ +YS+C  ++ A  +F  +  +D+ SW+T+I G+    L ++A+ +F +  ++G  P+D   + +  AC+ LG +
Sbjct:  181 QNG---RLEDAHKVFDKSPHR-DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWN----AMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383          
The following BLAST results are available for this feature:
BLAST of CX292477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PP210_ARATH8.357e-1627.92Pentatricopeptide repeat-containing protein At3g03... [more]
PP122_ARATH8.357e-1628.35Pentatricopeptide repeat-containing protein At1g74... [more]
PPR80_ARATH1.091e-1528.39Pentatricopeptide repeat-containing protein At1g53... [more]
PP425_ARATH1.091e-1528.89Pentatricopeptide repeat-containing protein At5g48... [more]
PP227_ARATH1.091e-1531.43Putative pentatricopeptide repeat-containing prote... [more]
PP369_ARATH1.425e-1529.75Pentatricopeptide repeat-containing protein At5g08... [more]
PP341_ARATH1.425e-1529.48Pentatricopeptide repeat-containing protein At4g30... [more]
PP257_ARATH1.425e-1530.67Pentatricopeptide repeat-containing protein At3g26... [more]
PP203_ARATH1.862e-1531.51Pentatricopeptide repeat-containing protein At2g46... [more]
PPR21_ARATH2.432e-1531.11Pentatricopeptide repeat-containing protein At1g08... [more]

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Properties
Property NameValue
Genbank descriptionC04016B09SK FlavFr1 Citrus clementina cDNA clone C04016B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292477 ID=CX292477; Name=CX292477; organism=Citrus clementina; type=EST; length=687bp
ACAGCCCAAGTTTCTATCAGCAGGACCAAAATGGTGGACAGTATCAGTGG
GACCAAAGTCGTAGGCAGTATCAGCAGAATCCTAATGAAGGACAATACCA
GTCCTACTCAGGGAATATTCAAAATGGGATGATGGCATCTCAAGTATTAA
ATAATTGTAAACATGAAGATGACTTTGCTGAGGCCTCTAGGAGTAGCCAA
AATAATGGAACCCTTGAGCAGCTGGATGGTTTGGTTAAGGAGGGGAAAGT
GAAGGAAGCTATAGAAGTTTTGGGGTTGTTAGAGAAGCAGTGCATTTCTG
TGGATTTACCCACATTTTCACAGTTAATGCAGGCATGTGGGGATGCAAAA
GCACTAGAAGAAGCAAAAGCTGTGCATGAACATGTTGAACGATTGCTGTC
CCCTCTCAGAGTTAGCACTTATAACGGGATTTTAAAAATGTATTCAGAAT
GTGACTCTATGGATGATGCGTTCAGTGTGTTTAGTAATATGACAGAGCGT
GATTTGACTTCTTGGGACACTATGATAACTGGGTTCGCCAAGAATGGTCT
TGGAGAGGATGCAGTTGATATTTTCTCTCAGTTCAAGCAAGCTGGACTGA
AACCAGATGATCAAATTTTTGTTGGTGTTTTCTCTGCATGTAGTGCTTTG
GGTGATGTTGTTGAGGGAATGCTGCACTTTGAATCAT
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