CX292477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16 Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683 + V+ G ++V + K + D+ TF + C A K +H + R + N +++MYS+C ++++ VF M+ RD+ +W MI + G GE A++ F+ +++G+ PD +F+ + ACS G V EG+ FE Sbjct: 481 ISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFE 634 HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 3 Query: 237 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668 K G EA+E G L + +S D TF +++AC E V+E + + + N ++ MYS + A VF M RDL SW+++I+G++ +G E+A++I+ + K + + PD V A L V +G Sbjct: 83 KNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16 Identity = 55/194 (28.35%), Postives = 95/194 (48.97%), Query Frame = 3 Query: 108 SGNIQNGMM--ASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 +G I+ G + A ++ + H DD + ++ + G+ G E+ L++ +S + + + ++ AC + + E K +H VE+ VS N ++ MYS C ++ A VF M E R + SW +MI G A +G GE+AV +F++ G+ PD F+ + ACS G + EG +F Sbjct: 211 AGYIKAGELESAKRIFSEMPHRDDVSWST----------MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYF 394
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR80_ARATH (Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15 Identity = 44/155 (28.39%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 + V G +EA+ + ++ + + TFS ++ A L E +H V ++ +S N ++ MY +C + +DA+ +FS ++E ++ S++TMI+G++ NG G+ A+ +FS + +G +P+ F+ + SAC +G V G +F+S Sbjct: 410 ISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKS 564
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15 Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = 3 Query: 147 LNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 L +CK + R + G G K+A+EV ++K I + T ++ A +LE + +H + E S +R+ G ++ MYS+C ++ A VF + ++ +W MI GFA +G DA+D F + +QAG++P D ++ + +ACS G V EG +F Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAED--SGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYF 398
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15 Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3 Query: 228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK-QAGLKPDDQIFVGVFSACS 644 G + G +EA+E+ L + +S + T++ L+ A L+ K H HV R P N ++ MYS+C ++ A +F NM ER SW+ M+ G++K+GLG + +++F + + +KPD + V S CS Sbjct: 228 GYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 367 HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 39/160 (24.38%), Postives = 81/160 (50.62%), Query Frame = 3 Query: 210 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSAC-----SALGDVVEGML 674 T+ + L G+++EA+ + +L + + + L+ AC D +AL + + VH H+ + +L Y +CD ++DA V M E+++ SW MI+ +++ G +A+ +F++ ++ KP++ F V ++C LG + G++ Sbjct: 23 TILPISQLCSNGRLQEALLEMAMLGPE---MGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLI 179
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 47/158 (29.75%), Postives = 86/158 (54.43%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVF--SNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 +DG VK G+ +A+E+ + + S + T ++ AC AL K VH ++ + PL V ++ MY++C S+ DA+SVF +++ E D W+ +I G A +G +++ +F + +++ + PD+ F+ + +ACS G V E F+S Sbjct: 212 IDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKS 369
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 3 Query: 168 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 D+ E S S N + G + G ++AI + ++K S + T + ++ AC AL K VH+ V + ++ MY++C S+ +A +F MT+++ +W+TMI+G+ +G G++A++IF + +G+ P F+ V ACS G V EG F S Sbjct: 378 DESPEKSLPSWN----AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 46/150 (30.67%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 234 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF-KQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 VK + EA ++ ++ + + T L+QA +L + VH++ + L ++ MYS+C S+ DA VF M + L +W++MIT +G GE+A+ +F + ++A ++PD FVGV SAC+ G+V +G+ +F Sbjct: 227 VKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYF 376
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP203_ARATH (Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15 Identity = 46/146 (31.51%), Postives = 76/146 (52.05%), Query Frame = 3 Query: 234 VKEGKVKEAIEVLGLL--EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVE 665 V G + EA +L L+ +K D TFS L+ AC +E+ K +H + ++ + +L MY++ + + DA F +M R++ SW+ MI GFA+NG G +A+ +F Q L+PD+ F V S+C+ + E Sbjct: 219 VLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWE 360 HSP 2 Score: 77.0258 bits (188), Expect = 1.022e-13 Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 3 Query: 228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683 G + G+ +EA+ + G + + + D TF+ ++ +C A+ E K V V + S +S N ++ YS ++ +A F ++ E DL SW ++I A +G E+++ +F Q L+PD F+ V SACS G V EG+ F+ Sbjct: 316 GFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQK-LQPDKITFLEVLSACSHGGLVQEGLRCFK 466
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 42/135 (31.11%), Postives = 78/135 (57.78%), Query Frame = 3 Query: 264 EVLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALG 653 E L L ++ S + P T ++ AC A++ + +H ++++ L + S ++ MY++C ++ A VF+++ + L+SW+ MI GFA +G + + D+FS+ ++ G++PDD FVG+ SACS G Sbjct: 350 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484 HSP 2 Score: 75.8702 bits (185), Expect = 2.276e-13 Identity = 48/211 (22.75%), Postives = 100/211 (47.39%), Query Frame = 3 Query: 27 QNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 659 QNG + + + + + ++P+ SY+ I+ + N K D+ S N + G + G KEA+E+ + K + D T ++ AC + ++E + VH ++ + N ++ +YS+C ++ A +F + +D+ SW+T+I G+ L ++A+ +F + ++G P+D + + AC+ LG + Sbjct: 181 QNG---RLEDAHKVFDKSPHR-DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWN----AMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383 The following BLAST results are available for this feature:
BLAST of CX292477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX292477 ID=CX292477; Name=CX292477; organism=Citrus clementina; type=EST; length=687bpback to top |